Rapid estimation of elastic constants by molecular dynamics simulation under constant stress W Shinoda, M Shiga, M Mikami Physical Review B 69 (13), 134103, 2004 | 1247 | 2004 |
Coarse-graining of condensed phase and biomolecular systems GA Voth CRC Press, 2008 | 770 | 2008 |
Large-scale molecular dynamics simulations of self-assembling systems ML Klein, W Shinoda science 321 (5890), 798-800, 2008 | 517 | 2008 |
Multi-property fitting and parameterization of a coarse grained model for aqueous surfactants W Shinoda, R DeVane, ML Klein Molecular Simulation 33 (1-2), 27-36, 2007 | 506 | 2007 |
Molecular dynamics simulations of ionic liquids: cation and anion dependence of self-diffusion coefficients of ions S Tsuzuki, W Shinoda, H Saito, M Mikami, H Tokuda, M Watanabe The Journal of Physical Chemistry B 113 (31), 10641-10649, 2009 | 294 | 2009 |
Zwitterionic lipid assemblies: molecular dynamics studies of monolayers, bilayers, and vesicles using a new coarse grain force field W Shinoda, R DeVane, ML Klein The Journal of Physical Chemistry B 114 (20), 6836-6849, 2010 | 291 | 2010 |
Permeability across lipid membranes W Shinoda Biochimica et Biophysica Acta (BBA)-Biomembranes 1858 (10), 2254-2265, 2016 | 286 | 2016 |
Coarse-grained molecular modeling of non-ionic surfactant self-assembly W Shinoda, R DeVane, ML Klein Soft Matter 4 (12), 2454-2462, 2008 | 275 | 2008 |
Molecular dynamics simulation of swollen membrane of perfluorinated ionomer S Urata, J Irisawa, A Takada, W Shinoda, S Tsuzuki, M Mikami The Journal of Physical Chemistry B 109 (9), 4269-4278, 2005 | 241 | 2005 |
Direct evidence for Li ion hopping conduction in highly concentrated sulfolane-based liquid electrolytes K Dokko, D Watanabe, Y Ugata, ML Thomas, S Tsuzuki, W Shinoda, ... The Journal of Physical Chemistry B 122 (47), 10736-10745, 2018 | 225 | 2018 |
Molecular dynamics study on the effects of chain branching on the physical properties of lipid bilayers: 2. Permeability W Shinoda, M Mikami, T Baba, M Hato The Journal of Physical Chemistry B 108 (26), 9346-9356, 2004 | 157 | 2004 |
Transferable coarse grain nonbonded interaction model for amino acids R DeVane, W Shinoda, PB Moore, ML Klein Journal of Chemical Theory and Computation 5 (8), 2115-2124, 2009 | 143 | 2009 |
Cholesterol effect on water permeability through DPPC and PSM lipid bilayers: a molecular dynamics study H Saito, W Shinoda The Journal of Physical Chemistry B 115 (51), 15241-15250, 2011 | 134 | 2011 |
Computer simulation studies of self-assembling macromolecules W Shinoda, R DeVane, ML Klein Current Opinion in Structural Biology 22 (2), 175-186, 2012 | 126 | 2012 |
Rigid‐body dynamics in the isothermal‐isobaric ensemble: A test on the accuracy and computational efficiency W Shinoda, M Mikami Journal of Computational Chemistry 24 (8), 920-930, 2003 | 117 | 2003 |
A Voronoi analysis of lipid area fluctuation in a bilayer W Shinoda, S Okazaki The Journal of Chemical Physics 109 (4), 1517-1521, 1998 | 115 | 1998 |
Structures of [Li (glyme)]+ complexes and their interactions with anions in equimolar mixtures of glymes and Li [TFSA]: analysis by molecular dynamics simulations S Tsuzuki, W Shinoda, M Matsugami, Y Umebayashi, K Ueno, T Mandai, ... Physical Chemistry Chemical Physics 17 (1), 126-129, 2015 | 107 | 2015 |
United-atom acyl chains for CHARMM phospholipids J Hénin, W Shinoda, ML Klein The Journal of Physical Chemistry B 112 (23), 7008-7015, 2008 | 102 | 2008 |
Molecular dynamics study of bipolar tetraether lipid membranes W Shinoda, K Shinoda, T Baba, M Mikami Biophysical Journal 89 (5), 3195-3202, 2005 | 95 | 2005 |
Comparative molecular dynamics study of ether-and ester-linked phospholipid bilayers K Shinoda, W Shinoda, T Baba, M Mikami The Journal of Chemical Physics 121 (19), 9648-9654, 2004 | 94 | 2004 |