| The somatic genomic landscape of glioblastoma CW Brennan, RGW Verhaak, A McKenna, B Campos, H Noushmehr, ... Cell 155 (2), 462-477, 2013 | 5004 | 2013 |
| Visualizing and interpreting cancer genomics data via the Xena platform MJ Goldman, B Craft, M Hastie, K Repečka, F McDade, A Kamath, ... Nature biotechnology 38 (6), 675-678, 2020 | 2567 | 2020 |
| Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 1767* | 2020 |
| The UCSC genome browser database: update 2011 PA Fujita, B Rhead, AS Zweig, AS Hinrichs, D Karolchik, MS Cline, ... Nucleic acids research 39 (suppl_1), D876-D882, 2010 | 1278 | 2010 |
| Toil enables reproducible, open source, big biomedical data analyses J Vivian, AA Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ... Nature biotechnology 35 (4), 314-316, 2017 | 1028 | 2017 |
| The UCSC Genome Browser database: extensions and updates 2013 LR Meyer, AS Zweig, AS Hinrichs, D Karolchik, RM Kuhn, M Wong, ... Nucleic acids research 41 (D1), D64-D69, 2012 | 900 | 2012 |
| Comprehensive molecular characterization of pheochromocytoma and paraganglioma L Fishbein, I Leshchiner, V Walter, L Danilova, AG Robertson, ... Cancer cell 31 (2), 181-193, 2017 | 645 | 2017 |
| The UCSC Xena platform for public and private cancer genomics data visualization and interpretation M Goldman, B Craft, M Hastie, K Repečka, F McDade, A Kamath, ... biorxiv, 326470, 2018 | 558 | 2018 |
| The UCSC Genome Browser database: extensions and updates 2011 TR Dreszer, D Karolchik, AS Zweig, AS Hinrichs, BJ Raney, RM Kuhn, ... Nucleic acids research 40 (D1), D918-D923, 2012 | 417 | 2012 |
| ENCODE whole-genome data in the UCSC Genome Browser: update 2012 KR Rosenbloom, TR Dreszer, JC Long, VS Malladi, CA Sloan, BJ Raney, ... Nucleic acids research 40 (D1), D912-D917, 2012 | 328 | 2012 |
| The UCSC cancer genomics browser: update 2015 M Goldman, B Craft, T Swatloski, M Cline, O Morozova, M Diekhans, ... Nucleic acids research 43 (D1), D812-D817, 2015 | 298 | 2015 |
| Exploring TCGA pan-cancer data at the UCSC cancer genomics browser MS Cline, B Craft, T Swatloski, M Goldman, S Ma, D Haussler, J Zhu Scientific reports 3 (1), 2652, 2013 | 293 | 2013 |
| BRCA Challenge: BRCA Exchange as a global resource for variants in BRCA1 and BRCA2 MS Cline, RG Liao, MT Parsons, B Paten, F Alquaddoomi, A Antoniou, ... PLoS genetics 14 (12), e1007752, 2018 | 200 | 2018 |
| The UCSC cancer genomics browser: update 2013 M Goldman, B Craft, T Swatloski, K Ellrott, M Cline, M Diekhans, S Ma, ... Nucleic acids research 41 (D1), D949-D954, 2013 | 199 | 2013 |
| Co-expression networks reveal the tissue-specific regulation of transcription and splicing A Saha, Y Kim, ADH Gewirtz, B Jo, C Gao, IC McDowell, BE Engelhardt, ... Genome research 27 (11), 1843-1858, 2017 | 171 | 2017 |
| The UCSC cancer genomics browser: update 2011 JZ Sanborn, SC Benz, B Craft, C Szeto, KM Kober, L Meyer, CJ Vaske, ... Nucleic acids research 39 (suppl_1), D951-D959, 2011 | 74 | 2011 |
| Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis F Yang, J Wang, BL Pierce, LS Chen, F Aguet, KG Ardlie, BB Cummings, ... Genome research 27 (11), 1859-1871, 2017 | 69 | 2017 |
| The UCSC Xena system for cancer genomics data visualization and interpretation M Goldman, B Craft, J Zhu, D Haussler Cancer Research 77 (13_Supplement), 2584-2584, 2017 | 60 | 2017 |
| The anatomy of a (potential) disaster: volcanoes, behavior, and population viability of the short-tailed albatross (Phoebastria albatrus) ME Finkelstein, S Wolf, M Goldman, DF Doak, PR Sievert, G Balogh, ... Biological conservation 143 (2), 321-331, 2010 | 34 | 2010 |
| A user guide for the online exploration and visualization of PCAWG data MJ Goldman, J Zhang, NA Fonseca, I Cortés-Ciriano, Q Xiang, B Craft, ... Nature communications 11 (1), 3400, 2020 | 33 | 2020 |
