| A review of computational tools for design and reconstruction of metabolic pathways L Wang, S Dash, CY Ng, CD Maranas Synthetic and systems biotechnology 2 (4), 243-252, 2017 | 141 | 2017 |
| Capturing the response of Clostridium acetobutylicumto chemical stressors using a regulated genome-scale metabolic model S Dash, TJ Mueller, KP Venkataramanan, ET Papoutsakis, CD Maranas Biotechnology for biofuels 7, 1-16, 2014 | 68 | 2014 |
| Thermodynamic analysis of the pathway for ethanol production from cellobiose in Clostridium thermocellum S Dash, DG Olson, SHJ Chan, D Amador-Noguez, LR Lynd, CD Maranas Metabolic engineering 55, 161-169, 2019 | 54 | 2019 |
| Metabolic modeling of clostridia: current developments and applications S Dash, CY Ng, CD Maranas FEMS microbiology letters 363 (4), fnw004, 2016 | 51 | 2016 |
| K-FIT: An accelerated kinetic parameterization algorithm using steady-state fluxomic data S Gopalakrishnan, S Dash, C Maranas Metabolic engineering 61, 197-205, 2020 | 47 | 2020 |
| Development of a core Clostridium thermocellum kinetic metabolic model consistent with multiple genetic perturbations S Dash, A Khodayari, J Zhou, EK Holwerda, DG Olson, LR Lynd, ... Biotechnology for biofuels 10, 1-16, 2017 | 44 | 2017 |
| Development of a Genome-Scale Metabolic Model of Clostridium thermocellum and Its Applications for Integration of Multi-Omics Datasets and Computational … S Garcia, RA Thompson, RJ Giannone, S Dash, CD Maranas, CT Trinh Frontiers in bioengineering and biotechnology 8, 772, 2020 | 28 | 2020 |
| Accelerating flux balance calculations in genome-scale metabolic models by localizing the application of loopless constraints SHJ Chan, L Wang, S Dash, CD Maranas Bioinformatics 34 (24), 4248-4255, 2018 | 26 | 2018 |
| Exploring the combinatorial space of complete pathways to chemicals L Wang, CY Ng, S Dash, CD Maranas Biochemical Society Transactions 46 (3), 513-522, 2018 | 15 | 2018 |
| Assessing the impact of substrate-level enzyme regulations limiting ethanol titer in Clostridium thermocellum using a core kinetic model C Foster, VS Boorla, S Dash, S Gopalakrishnan, TB Jacobson, DG Olson, ... Metabolic Engineering, 2022 | 11 | 2022 |
| Assessing the Impact of Allosteric Enzyme Regulations Limiting Ethanol Titer in Clostridium Thermocellum Using a Core Kinetic Model C Foster, VS Boorla, T Jacobson, R Chowdhury, S Gopalakrishnan, ... 2020 Virtual AIChE Annual Meeting, 2020 | | 2020 |
| 13C Metabolic flux analysis and kinetic modeling of Clostridium thermocellum grown on cellobiose L Lynd, V Boorla, T Jacobson, S Dash, R Chowdhury, C Maranas, ... American Chemical Society SciMeetings 1 (2), 2020 | | 2020 |
| From 13c Labeling Data to a Core Metabolism Kinetic Model: A Kinetic Model Parameterization Pipeline C Foster, S Gopalakrishnan, S Srinivasan, S Dash, M Antoniewicz, ... 2019 AIChE Annual Meeting, 2019 | | 2019 |
| Metabolic Modeling of Clostridia for Biofuel Production S Dash The Pennsylvania State University, 2019 | | 2019 |
| Constructing Predictive Kinetic Models of Metabolism with Transcriptional Regulation S Dash, S Gopalakrishnan, C Foster, CD Maranas 2017 AIChE Annual Meeting, 2017 | | 2017 |
| Kinetic modeling of metabolism in clostridia S Dash, A Khodayari, G Stephanopoulos, L Lynd, C Maranas ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 253, 2017 | | 2017 |
| Kinetic modeling of metabolism in obligatory anaerobes S Dash, A Khodayari, EK Holwerda, P Olson, M Theisen, JC Liao, ... 11th Metabolic Engineering Conference 2016, 600-601, 2016 | | 2016 |
| Development of regulated metabolic models for anaerobic organisms S Dash, C Maranas ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 249, 2015 | | 2015 |
| Modeling a Reversed β-oxidation Cycle Into the Genome Scale Model of Zymomonas mobilis S Dash | | 2013 |
| Ensemble cell-wide kinetic modeling of anaerobic organisms to support fuels and chemicals production S Dash, A Khodayari, EK Holwerda, DG Olson, MA Islam, M Theisen, ... Proceedings of the National Academy of Sciences of the United States of …, 2010 | | 2010 |
