Hoover NPT dynamics for systems varying in shape and size S Melchionna, G Ciccotti, B Lee Holian Molecular Physics 78 (3), 533-544, 1993 | 1278 | 1993 |
Amyloid β protein and Alzheimer’s disease: When computer simulations complement experimental studies J Nasica-Labouze, PH Nguyen, F Sterpone, O Berthoumieu, NV Buchete, ... Chemical reviews 115 (9), 3518-3563, 2015 | 619 | 2015 |
Amyloid oligomers: A joint experimental/computational perspective on Alzheimer’s disease, Parkinson’s disease, type II diabetes, and amyotrophic lateral sclerosis PH Nguyen, A Ramamoorthy, BR Sahoo, J Zheng, P Faller, JE Straub, ... Chemical reviews 121 (4), 2545-2647, 2021 | 488 | 2021 |
Evaluation of artery visualizations for heart disease diagnosis M Borkin, K Gajos, A Peters, D Mitsouras, S Melchionna, F Rybicki, ... IEEE transactions on visualization and computer graphics 17 (12), 2479-2488, 2011 | 217 | 2011 |
Intermittent permeation of cylindrical nanopores by water R Allen, S Melchionna, JP Hansen Physical review letters 89 (17), 175502, 2002 | 168 | 2002 |
A flexible high‐performance Lattice Boltzmann GPU code for the simulations of fluid flows in complex geometries M Bernaschi, M Fatica, S Melchionna, S Succi, E Kaxiras Concurrency and computation: practice and experience 22 (1), 1-14, 2010 | 166 | 2010 |
The OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systems F Sterpone, S Melchionna, P Tuffery, S Pasquali, N Mousseau, ... Chemical Society Reviews 43 (13), 4871-4893, 2014 | 164 | 2014 |
MUPHY: A parallel MUlti PHYsics/scale code for high performance bio-fluidic simulations M Bernaschi, S Melchionna, S Succi, M Fyta, E Kaxiras, JK Sircar Computer Physics Communications 180 (9), 1495-1502, 2009 | 146 | 2009 |
Electrostatic potential inside ionic solutions confined by dielectrics: a variational approach R Allen, JP Hansen, S Melchionna Physical Chemistry Chemical Physics 3 (19), 4177-4186, 2001 | 144 | 2001 |
Multiscale coupling of molecular dynamics and hydrodynamics: application to DNA translocation through a nanopore MG Fyta, S Melchionna, E Kaxiras, S Succi Multiscale Modeling & Simulation 5 (4), 1156-1173, 2006 | 126 | 2006 |
Molecular dynamics investigation of water permeation through nanopores R Allen, JP Hansen, S Melchionna The Journal of chemical physics 119 (7), 3905-3919, 2003 | 107 | 2003 |
Hydrodynamic correlations in the translocation of a biopolymer through a nanopore: Theory and multiscale simulations M Fyta, S Melchionna, S Succi, E Kaxiras Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 78 (3 …, 2008 | 104 | 2008 |
Design of quasisymplectic propagators for Langevin dynamics S Melchionna The Journal of chemical physics 127 (4), 2007 | 99 | 2007 |
Thermophilic proteins: insight and perspective from in silico experiments F Sterpone, S Melchionna Chemical Society Reviews 41 (5), 1665-1676, 2012 | 88 | 2012 |
Prediction of coronary artery plaque progression and potential rupture from 320-detector row prospectively ECG-gated single heart beat CT angiography: Lattice Boltzmann … FJ Rybicki, S Melchionna, D Mitsouras, AU Coskun, AG Whitmore, ... The International Journal of Cardiovascular Imaging 25, 289-299, 2009 | 84 | 2009 |
Size selectivity of narrow pores D Goulding, JP Hansen, S Melchionna Physical Review Letters 85 (5), 1132, 2000 | 83 | 2000 |
Protein simulations in fluids: Coupling the OPEP coarse-grained force field with hydrodynamics F Sterpone, P Derreumaux, S Melchionna Journal of chemical theory and computation 11 (4), 1843-1853, 2015 | 81 | 2015 |
Hydrokinetic approach to large-scale cardiovascular blood flow S Melchionna, M Bernaschi, S Succi, E Kaxiras, FJ Rybicki, D Mitsouras, ... Computer Physics Communications 181 (3), 462-472, 2010 | 80 | 2010 |
The role of water coordination in binary mixtures. A study of two model amphiphilic molecules in aqueous solutions by molecular dynamics and NMR R Sinibaldi, C Casieri, S Melchionna, G Onori, AL Segre, S Viel, ... The Journal of Physical Chemistry B 110 (17), 8885-8892, 2006 | 77 | 2006 |
Multiscale simulation of cardiovascular flows on the IBM Bluegene/P: Full heart-circulation system at red-blood cell resolution A Peters, S Melchionna, E Kaxiras, J Lätt, J Sircar, M Bernaschi, M Bison, ... SC'10: Proceedings of the 2010 ACM/IEEE International Conference for High …, 2010 | 72 | 2010 |