Binning metagenomic contigs by coverage and composition J Alneberg, BS Bjarnason, I De Bruijn, M Schirmer, J Quick, UZ Ijaz, ... Nature methods 11 (11), 1144-1146, 2014 | 1521 | 2014 |
Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform M Schirmer, UZ Ijaz, R D'Amore, N Hall, WT Sloan, C Quince Nucleic acids research 43 (6), e37-e37, 2015 | 773 | 2015 |
A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling R D’Amore, UZ Ijaz, M Schirmer, JG Kenny, R Gregory, AC Darby, ... BMC genomics 17 (1), 1-20, 2016 | 392 | 2016 |
Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data M Schirmer, R D’Amore, UZ Ijaz, N Hall, C Quince BMC bioinformatics 17, 1-15, 2016 | 352 | 2016 |
Bacterial diversity along a 2600 km river continuum D Savio, L Sinclair, UZ Ijaz, J Parajka, GH Reischer, P Stadler, ... Environmental microbiology 17 (12), 4994-5007, 2015 | 273 | 2015 |
Extensive modulation of the fecal metagenome in children with Crohn's disease during exclusive enteral nutrition C Quince, UZ Ijaz, N Loman, AM Eren, D Saulnier, J Russell, SJ Haig, ... The American journal of gastroenterology 110 (12), 1718, 2015 | 255 | 2015 |
Treatment of active Crohn’s disease with an ordinary food-based diet that replicates exclusive enteral nutrition V Svolos, R Hansen, B Nichols, C Quince, UZ Ijaz, RT Papadopoulou, ... Gastroenterology 156 (5), 1354-1367. e6, 2019 | 249 | 2019 |
Metagenomic Evidence for the Presence of Comammox Nitrospira-Like Bacteria in a Drinking Water System AJ Pinto, DN Marcus, UZ Ijaz, QM Bautista-de Lose Santos, GJ Dick, ... Msphere 1 (1), e00054-15, 2016 | 226 | 2016 |
Three-dimensional ultrasound imaging RW Prager, UZ Ijaz, AH Gee, GM Treece Proceedings of the Institution of Mechanical Engineers, Part H: Journal of …, 2010 | 183 | 2010 |
Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic … BN Parsons, UZ Ijaz, R D’Amore, MD Burkitt, R Eccles, L Lenzi, ... PLoS pathogens 13 (11), e1006653, 2017 | 182 | 2017 |
The active microbial community more accurately reflects the anaerobic digestion process: 16S rRNA (gene) sequencing as a predictive tool J De Vrieze, AJ Pinto, WT Sloan, UZ Ijaz Microbiome 6 (1), 1-13, 2018 | 126 | 2018 |
Microbial community redundancy in anaerobic digestion drives process recovery after salinity exposure J De Vrieze, MER Christiaens, D Walraedt, A Devooght, UZ Ijaz, N Boon Water research 111, 109-117, 2017 | 113 | 2017 |
Host–microbiome interactions in human type 2 diabetes following prebiotic fibre (galacto-oligosaccharide) intake C Pedersen, E Gallagher, F Horton, RJ Ellis, UZ Ijaz, H Wu, E Jaiyeola, ... British Journal of Nutrition 116 (11), 1869-1877, 2016 | 104 | 2016 |
Long solids retention times and attached growth phase favor prevalence of comammox bacteria in nitrogen removal systems I Cotto, Z Dai, L Huo, CL Anderson, KJ Vilardi, U Ijaz, W Khunjar, C Wilson, ... Water research 169, 115268, 2020 | 96 | 2020 |
CONCOCT: clustering contigs on coverage and composition J Alneberg, BS Bjarnason, I de Bruijn, M Schirmer, J Quick, UZ Ijaz, ... arXiv preprint arXiv:1312.4038, 2013 | 96 | 2013 |
Emerging investigators series: microbial communities in full-scale drinking water distribution systems–a meta-analysis QM Bautista-de los Santos, JL Schroeder, MC Sevillano-Rivera, ... Environmental Science: Water Research & Technology 2 (4), 631-644, 2016 | 95 | 2016 |
NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform ST Calus, UZ Ijaz, AJ Pinto GigaScience 7 (12), giy140, 2018 | 80 | 2018 |
The effect of DNA extraction methodology on gut microbiota research applications K Gerasimidis, M Bertz, C Quince, K Brunner, A Bruce, E Combet, S Calus, ... BMC research notes 9, 1-10, 2016 | 77 | 2016 |
Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines B Torondel, JHJ Ensink, O Gundogdu, UZ Ijaz, J Parkhill, F Abdelahi, ... Microbial biotechnology 9 (2), 209-223, 2016 | 72 | 2016 |
Linking statistical and ecological theory: Hubbell's unified neutral theory of biodiversity as a hierarchical Dirichlet process K Harris, TL Parsons, UZ Ijaz, L Lahti, I Holmes, C Quince Proceedings of the IEEE 105 (3), 516-529, 2015 | 71 | 2015 |