Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding R Lu, X Zhao, J Li, P Niu, B Yang, H Wu, W Wang, H Song, B Huang, ... The lancet 395 (10224), 565-574, 2020 | 13292 | 2020 |
A new coronavirus associated with human respiratory disease in China F Wu, S Zhao, B Yu, YM Chen, W Wang, ZG Song, Y Hu, ZW Tao, JH Tian, ... Nature 579 (7798), 265-269, 2020 | 11344 | 2020 |
The proximal origin of SARS-CoV-2 KG Andersen, A Rambaut, WI Lipkin, EC Holmes, RF Garry Nature medicine 26 (4), 450-452, 2020 | 5702 | 2020 |
A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology A Rambaut, EC Holmes, Á O’Toole, V Hill, JT McCrone, C Ruis, ... Nature microbiology 5 (11), 1403-1407, 2020 | 2166 | 2020 |
A metagenomic survey of microbes in honey bee colony collapse disorder DL Cox-Foster, S Conlan, EC Holmes, G Palacios, JD Evans, NA Moran, ... Science 318 (5848), 283-287, 2007 | 2149 | 2007 |
Identifying SARS-CoV-2-related coronaviruses in Malayan pangolins TTY Lam, N Jia, YW Zhang, MHH Shum, JF Jiang, HC Zhu, YG Tong, ... Nature 583 (7815), 282-285, 2020 | 2057 | 2020 |
Classification of hepatitis C virus into six major genotypes and a series of subtypes by phylogenetic analysis of the NS-5 region P Simmonds, EC Holmes, TA Cha, SW Chan, F McOmish, B Irvine, ... Journal of general virology 74 (11), 2391-2399, 1993 | 1867 | 1993 |
Molecular Evolution: A Phylogenetic Approach RDM Page, EC Holmes Oxford University Press, 1998 | 1580* | 1998 |
Rates of evolutionary change in viruses: patterns and determinants S Duffy, LA Shackelton, EC Holmes Nature Reviews Genetics 9 (4), 267-276, 2008 | 1574 | 2008 |
New world bats harbor diverse influenza A viruses S Tong, X Zhu, Y Li, M Shi, J Zhang, M Bourgeois, H Yang, X Chen, ... PLoS pathogens 9 (10), e1003657, 2013 | 1542 | 2013 |
Unifying the epidemiological and evolutionary dynamics of pathogens BT Grenfell, OG Pybus, JR Gog, JLN Wood, JM Daly, JA Mumford, ... science 303 (5656), 327-332, 2004 | 1433 | 2004 |
A proposed system for the nomenclature of hepatitis C viral genotypes P Simmonds, A Alberti, HJ Alter, F Bonino, DW Bradley, C Brechot, ... Hepatology 19 (5), 1321-1324, 1994 | 1327 | 1994 |
Redefining the invertebrate RNA virosphere M Shi, XD Lin, JH Tian, LJ Chen, X Chen, CX Li, XC Qin, J Li, JP Cao, ... Nature 540 (7634), 539-543, 2016 | 1174 | 2016 |
The genomic and epidemiological dynamics of human influenza A virus A Rambaut, OG Pybus, MI Nelson, C Viboud, JK Taubenberger, ... Nature 453 (7195), 615-619, 2008 | 1061 | 2008 |
HIV evolution: CTL escape mutation and reversion after transmission AJ Leslie, KJ Pfafferott, P Chetty, R Draenert, MM Addo, M Feeney, ... Nature medicine 10 (3), 282-289, 2004 | 1019 | 2004 |
Comparative genomics reveals insights into avian genome evolution and adaptation G Zhang, C Li, Q Li, B Li, DM Larkin, C Lee, JF Storz, A Antunes, ... Science 346 (6215), 1311-1320, 2014 | 925 | 2014 |
Cross-species virus transmission and the emergence of new epidemic diseases CR Parrish, EC Holmes, DM Morens, EC Park, DS Burke, CH Calisher, ... Microbiology and Molecular Biology Reviews 72 (3), 457-470, 2008 | 848 | 2008 |
The causes and consequences of HIV evolution A Rambaut, D Posada, KA Crandall, EC Holmes Nature Reviews Genetics 5 (1), 52-61, 2004 | 805 | 2004 |
A genomic perspective on the origin and emergence of SARS-CoV-2 YZ Zhang, EC Holmes Cell 181 (2), 223-227, 2020 | 784 | 2020 |
The origin, emergence and evolutionary genetics of dengue virus EC Holmes, SS Twiddy Infection, genetics and evolution 3 (1), 19-28, 2003 | 778 | 2003 |