| Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters M Hugoni, N Taib, D Debroas, I Domaizon, I Jouan Dufournel, G Bronner, ... Proceedings of the National Academy of Sciences 110 (15), 6004-6009, 2013 | 257 | 2013 |
| Evidence for an active rare biosphere within freshwater protists community D Debroas, M Hugoni, I Domaizon Molecular Ecology 24 (6), 1236-1247, 2015 | 104 | 2015 |
| Plant host habitat and root exudates shape fungal diversity M Hugoni, P Luis, J Guyonnet, FZ Haichar Mycorrhiza 28 (5), 451-463, 2018 | 75 | 2018 |
| Dynamics of ammonia-oxidizing Archaea and Bacteria in contrasted freshwater ecosystems M Hugoni, S Etien, A Bourges, C Lepère, I Domaizon, C Mallet, G Bronner, ... Research in Microbiology 164 (4), 360-370, 2013 | 56 | 2013 |
| Key role of alphaproteobacteria and cyanobacteria in the formation of stromatolites of Lake Dziani Dzaha (Mayotte, Western Indian Ocean) E Gérard, S De Goeyse, M Hugoni, H Agogué, L Richard, V Milesi, ... Frontiers in Microbiology 9, 796, 2018 | 52 | 2018 |
| Diversity, spatial distribution and activity of fungi in freshwater ecosystems C Lepère, I Domaizon, JF Humbert, L Jardillier, M Hugoni, D Debroas PeerJ 7, e6247, 2019 | 49 | 2019 |
| Contrasted ecological niches shape fungal and prokaryotic community structure in mangroves sediments P Luis, G Saint‐Genis, L Vallon, C Bourgeois, M Bruto, C Marchand, ... Environmental Microbiology 21 (4), 1407-1424, 2019 | 48 | 2019 |
| Temporal dynamics of active Archaea in oxygen‐depleted zones of two deep lakes M Hugoni, I Domaizon, N Taib, C Biderre‐Petit, H Agogué, PE Galand, ... Environmental Microbiology Reports 7 (2), 321-329, 2015 | 38 | 2015 |
| Spatiotemporal variations in microbial diversity across the three domains of life in a tropical thalassohaline lake (Dziani Dzaha, Mayotte Island) M Hugoni, A Escalas, C Bernard, S Nicolas, D Jezequel, F Vazzoler, ... Molecular ecology 27 (23), 4775-4786, 2018 | 37 | 2018 |
| Diversity and dynamics of active small microbial eukaryotes in the anoxic zone of a freshwater meromictic lake (Pavin, France) C Lepère, I Domaizon, M Hugoni, A Vellet, D Debroas Frontiers in microbiology 7, 130, 2016 | 37 | 2016 |
| Microbial ecology of tourist Paleolithic caves Z Bontemps, L Alonso, T Pommier, M Hugoni, Y Moënne-Loccoz Science of the Total Environment 816, 151492, 2022 | 32 | 2022 |
| Very low phytoplankton diversity in a tropical saline-alkaline lake, with co-dominance of Arthrospira fusiformis (Cyanobacteria) and Picocystis salinarum (Chlorophyta) C Bernard, A Escalas, N Villeriot, H Agogué, M Hugoni, C Duval, C Carré, ... Microbial ecology 78, 603-617, 2019 | 31 | 2019 |
| Aedes albopictus mosquitoes host a locally structured mycobiota with evidence of reduced fungal diversity in invasive populations P Luis, L Vallon, FH Tran, M Hugoni, V Tran-Van, P Mavingui, G Minard, ... Fungal Ecology 39, 257-266, 2019 | 30 | 2019 |
| Temporal dynamics of active prokaryotic nitrifiers and archaeal communities from river to sea M Hugoni, H Agogué, N Taib, I Domaizon, A Moné, PE Galand, G Bronner, ... Microbial ecology 70, 473-483, 2015 | 23 | 2015 |
| Transient dynamics of archaea and bacteria in sediments and brine across a salinity gradient in a solar saltern of Goa, India K Mani, N Taib, M Hugoni, G Bronner, JM Bragança, D Debroas Frontiers in microbiology 11, 1891, 2020 | 22 | 2020 |
| Unique and highly variable bacterial communities inhabiting the surface microlayer of an oligotrophic lake M Hugoni, A Vellet, D Debroas Aquatic Microbial Ecology 79 (2), 115-125, 2017 | 19 | 2017 |
| Geochemistry of an endorheic thalassohaline ecosystem: the Dziani Dzaha crater lake (Mayotte Archipelago, Indian Ocean) G Sarazin, D Jézéquel, C Leboulanger, E Fouilland, E Le Floc’h, M Bouvy, ... Comptes Rendus. Géoscience 352 (8), 559-577, 2020 | 10 | 2020 |
| Diel rhythm does not shape the vertical distribution of bacterial and archaeal 16S rRNA transcript diversity in intertidal sediments: a mesocosm study C Lavergne, M Hugoni, C Hubas, D Debroas, C Dupuy, H Agogué Microbial ecology 75, 364-374, 2018 | 10 | 2018 |
| An experimental design to test the effect of wheat variety mixtures on biodiversity and ecosystem services F Dubs, X Le Roux, V Allard, B Andrieu, S Barot, A Cantarel, ... | 9 | 2018 |
| Influence of aphotic haloclines and euxinia on organic biomarkers and microbial communities in a thalassohaline and alkaline volcanic crater lake D Sala, V Grossi, H Agogué, C Leboulanger, D Jézéquel, G Sarazin, ... Geobiology 20 (2), 292-309, 2022 | 7 | 2022 |
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