| PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta S Chaudhury, S Lyskov, JJ Gray Bioinformatics 26 (5), 689-691, 2010 | 740 | 2010 |
| Benchmarking and analysis of protein docking performance in Rosetta v3. 2 S Chaudhury, M Berrondo, BD Weitzner, P Muthu, H Bergman, JJ Gray PLOS ONE 6 (8), e22477, 2011 | 333 | 2011 |
| Toward high‐resolution homology modeling of antibody Fv regions and application to antibody–antigen docking A Sivasubramanian, A Sircar, S Chaudhury, JJ Gray Proteins 74 (2), 497-514, 2009 | 230 | 2009 |
| Conformer selection and induced fit in flexible backbone protein-protein docking using computational and NMR ensembles S Chaudhury, JJ Gray Journal of Molecular Biology 381 (4), 1068, 2008 | 196 | 2008 |
| Exploring polypharmacology using a ROCS-based target fishing approach MDM AbdulHameed, S Chaudhury, N Singh, H Sun, A Wallqvist, GJ Tawa Journal of Chemical Information and Modeling 52 (2), 492-505, 2012 | 93 | 2012 |
| The biological function of antibodies induced by the RTS, S/AS01 malaria vaccine candidate is determined by their fine specificity S Chaudhury, CF Ockenhouse, JA Regules, S Dutta, A Wallqvist, ... Malaria Journal 15, 1-12, 2016 | 85 | 2016 |
| Delayed fractional dose regimen of the RTS, S/AS01 malaria vaccine candidate enhances an IgG4 response that inhibits serum opsonophagocytosis S Chaudhury, JA Regules, CA Darko, S Dutta, A Wallqvist, NC Waters, ... Scientific Reports 7 (1), 7998, 2017 | 72 | 2017 |
| Simulation of B cell affinity maturation explains enhanced antibody cross-reactivity induced by the polyvalent malaria vaccine AMA1 S Chaudhury, J Reifman, A Wallqvist Journal of Immunology 193 (5), 2073-2086, 2014 | 63 | 2014 |
| A generalized approach to sampling backbone conformations with RosettaDock for CAPRI rounds 13–19 A Sircar, S Chaudhury, KP Kilambi, M Berrondo, JJ Gray Proteins 78 (15), 3115-3123, 2010 | 63 | 2010 |
| Incorporating biochemical information and backbone flexibility in RosettaDock for CAPRI rounds 6–12 S Chaudhury, A Sircar, A Sivasubramanian, M Berrondo, JJ Gray Proteins 69 (4), 793-800, 2007 | 57 | 2007 |
| Computational and Experimental Validation of B and T-Cell Epitopes of the In Vivo Immune Response to a Novel Malarial Antigen ES Bergmann-Leitner, S Chaudhury, NJ Steers, M Sabato, V Delvecchio, ... PLOS ONE 8 (8), e71610, 2013 | 55 | 2013 |
| A delayed fractionated dose RTS, S AS01 vaccine regimen mediates protection via improved T follicular helper and B cell responses S Pallikkuth, S Chaudhury, P Lu, L Pan, E Jongert, U Wille-Reece, ... Elife 9, e51889, 2020 | 51 | 2020 |
| QSAR Classification Model for Antibacterial Compounds and Its Use in Virtual Screening N Singh, S Chaudhury, R Liu, MDM AbdulHameed, G Tawa, A Wallqvist Journal of Chemical Information and Modeling 52 (10), 2559-2569, 2012 | 47 | 2012 |
| Identification of structural mechanisms of HIV-1 protease specificity using computational peptide docking: implications for drug resistance S Chaudhury, JJ Gray Structure 17 (12), 1636-1648, 2009 | 45 | 2009 |
| Comparison of ELISA with electro-chemiluminescence technology for the qualitative and quantitative assessment of serological responses to vaccination JS Bolton, S Chaudhury, S Dutta, S Gregory, E Locke, T Pierson, ... Malaria Journal 19 (1), 1-13, 2020 | 37 | 2020 |
| Tegaserod mimics the neurostimulatory glycan polysialic acid and promotes nervous system repair J Bushman, B Mishra, M Ezra, S Gul, C Schulze, S Chaudhury, D Ripoll, ... Neuropharmacology 79, 456-466, 2014 | 35 | 2014 |
| Synthesis and evaluation of Strychnos alkaloids as MDR reversal agents for cancer cell eradication S Munagala, G Sirasani, P Kokkonda, M Phadke, N Krynetskaia, P Lu, ... Bioorganic & Medicinal Chemistry 22 (3), 1148-1155, 2014 | 35 | 2014 |
| Breadth of humoral immune responses to the C-terminus of the circumsporozoite protein is associated with protective efficacy induced by the RTS, S malaria vaccine S Chaudhury, RS MacGill, AM Early, JS Bolton, CR King, E Locke, ... Vaccine, 2021 | 33 | 2021 |
| BRILIA: integrated tool for high-throughput annotation and lineage tree assembly of B-cell repertoires DW Lee, IV Khavrutskii, A Wallqvist, S Bavari, CL Cooper, S Chaudhury Frontiers in Immunology 7, 681, 2017 | 32 | 2017 |
| Dengue virus antibody database: Systematically linking serotype-specificity with epitope mapping in dengue virus S Chaudhury, GD Gromowski, DR Ripoll, IV Khavrutskii, V Desai, ... PLoS Neglected Tropical Diseases 11 (2), e0005395, 2017 | 28 | 2017 |
