Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry JE Elias, SP Gygi Nature methods 4 (3), 207-214, 2007 | 4228 | 2007 |
A proteomics approach to understanding protein ubiquitination J Peng, D Schwartz, JE Elias, CC Thoreen, D Cheng, G Marsischky, ... Nature biotechnology 21 (8), 921-926, 2003 | 2022 | 2003 |
Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC− MS/MS) for large-scale protein analysis: the yeast proteome J Peng, JE Elias, CC Thoreen, LJ Licklider, SP Gygi Journal of proteome research 2 (1), 43-50, 2003 | 1958 | 2003 |
A tissue-specific atlas of mouse protein phosphorylation and expression EL Huttlin, MP Jedrychowski, JE Elias, T Goswami, R Rad, SA Beausoleil, ... Cell 143 (7), 1174-1189, 2010 | 1797 | 2010 |
Large-scale characterization of HeLa cell nuclear phosphoproteins SA Beausoleil, M Jedrychowski, D Schwartz, JE Elias, J Villén, J Li, ... Proceedings of the National Academy of Sciences 101 (33), 12130-12135, 2004 | 1709 | 2004 |
Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations JE Elias, W Haas, BK Faherty, SP Gygi Nature methods 2 (9), 667-675, 2005 | 859 | 2005 |
Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania SA Smits, J Leach, ED Sonnenburg, CG Gonzalez, JS Lichtman, G Reid, ... Science 357 (6353), 802-806, 2017 | 802 | 2017 |
Gut-microbiota-targeted diets modulate human immune status HC Wastyk, GK Fragiadakis, D Perelman, D Dahan, BD Merrill, ... Cell 184 (16), 4137-4153. e14, 2021 | 701 | 2021 |
Target-decoy search strategy for mass spectrometry-based proteomics JE Elias, SP Gygi Proteome bioinformatics, 55-71, 2010 | 677 | 2010 |
Quantitative imaging of gut microbiota spatial organization KA Earle, G Billings, M Sigal, JS Lichtman, GC Hansson, JE Elias, ... Cell host & microbe 18 (4), 478-488, 2015 | 447 | 2015 |
The phosphoproteomes of Plasmodium falciparum and Toxoplasma gondii reveal unusual adaptations within and beyond the parasites' boundaries M Treeck, JL Sanders, JE Elias, JC Boothroyd Cell host & microbe 10 (4), 410-419, 2011 | 440 | 2011 |
BRCA1-dependent ubiquitination of γ-tubulin regulates centrosome number LM Starita, Y Machida, S Sankaran, JE Elias, K Griffin, BP Schlegel, ... Molecular and cellular biology 24 (19), 8457-8466, 2004 | 409 | 2004 |
Genetic dissection of Flaviviridae host factors through genome-scale CRISPR screens CD Marceau, AS Puschnik, K Majzoub, YS Ooi, SM Brewer, G Fuchs, ... Nature 535 (7610), 159-163, 2016 | 403 | 2016 |
A function for cyclin D1 in DNA repair uncovered by protein interactome analyses in human cancers S Jirawatnotai, Y Hu, W Michowski, JE Elias, L Becks, F Bienvenu, ... Nature 474 (7350), 230-234, 2011 | 390 | 2011 |
Intensity-based protein identification by machine learning from a library of tandem mass spectra JE Elias, FD Gibbons, OD King, FP Roth, SP Gygi Nature biotechnology 22 (2), 214-219, 2004 | 389 | 2004 |
Large-Scale Phosphorylation Analysis of α-Factor-Arrested Saccharomyces cerevisiae X Li, SA Gerber, AD Rudner, SA Beausoleil, W Haas, J Villen, JE Elias, ... Journal of proteome research 6 (3), 1190-1197, 2007 | 380 | 2007 |
Optimization and Use of Peptide Mass Measurement Accuracy in Shotgun Proteomics* S W Haas, BK Faherty, SA Gerber, JE Elias, SA Beausoleil, CE Bakalarski, ... Molecular & Cellular Proteomics 5 (7), 1326-1337, 2006 | 329 | 2006 |
Physiological blood–brain transport is impaired with age by a shift in transcytosis AC Yang, MY Stevens, MB Chen, DP Lee, D Stähli, D Gate, K Contrepois, ... Nature 583 (7816), 425-430, 2020 | 327 | 2020 |
The Parkinson's disease-associated DJ-1 protein is a transcriptional co-activator that protects against neuronal apoptosis J Xu, N Zhong, H Wang, JE Elias, CY Kim, I Woldman, C Pifl, SP Gygi, ... Human molecular genetics 14 (9), 1231-1241, 2005 | 325 | 2005 |
Transcriptional role of cyclin D1 in development revealed by a genetic–proteomic screen F Bienvenu, S Jirawatnotai, JE Elias, CA Meyer, K Mizeracka, A Marson, ... Nature 463 (7279), 374-378, 2010 | 308 | 2010 |