Improving physical realism, stereochemistry, and side‐chain accuracy in homology modeling: four approaches that performed well in CASP8 E Krieger, K Joo, J Lee, J Lee, S Raman, J Thompson, M Tyka, D Baker, ... Proteins: Structure, Function, and Bioinformatics 77 (S9), 114-122, 2009 | 1451 | 2009 |
New Monte Carlo algorithm: entropic sampling J Lee Physical review letters 71 (2), 211, 1993 | 741 | 1993 |
Finite-size scaling and Monte Carlo simulations of first-order phase transitions J Lee, JM Kosterlitz Physical Review B 43 (4), 3265, 1991 | 406 | 1991 |
New numerical method to study phase transitions J Lee, JM Kosterlitz Physical review letters 65 (2), 137, 1990 | 404 | 1990 |
New optimization method for conformational energy calculations on polypeptides: conformational space annealing J Lee, HA Scheraga, S Rackovsky Journal of computational chemistry 18 (9), 1222-1232, 1997 | 402 | 1997 |
Ab initio protein structure prediction J Lee, PL Freddolino, Y Zhang From protein structure to function with bioinformatics, 3-35, 2017 | 294 | 2017 |
CHARMM-GUI Glycan Modeler for modeling and simulation of carbohydrates and glycoconjugates SJ Park, J Lee, Y Qi, NR Kern, HS Lee, S Jo, IS Joung, K Joo, J Lee, W Im Glycobiology 29 (4), 320-331, 2019 | 256 | 2019 |
Protein structure prediction by global optimization of a potential energy function A Liwo, J Lee, DR Ripoll, J Pillardy, HA Scheraga Proceedings of the National Academy of Sciences 96 (10), 5482-5485, 1999 | 254 | 1999 |
Assessment of network module identification across complex diseases S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ... Nature methods 16 (9), 843-852, 2019 | 252 | 2019 |
Recent improvements in prediction of protein structure by global optimization of a potential energy function J Pillardy, C Czaplewski, A Liwo, J Lee, DR Ripoll, R Kaźmierkiewicz, ... Proceedings of the National Academy of Sciences 98 (5), 2329-2333, 2001 | 198 | 2001 |
Energy-based de novo protein folding by conformational space annealing and an off-lattice united-residue force field: Application to the 10-55 fragment of … J Lee, A Liwo, HA Scheraga Proceedings of the National Academy of Sciences 96 (5), 2025-2030, 1999 | 193 | 1999 |
Unbiased Global Optimization of Lennard-Jones Clusters for Using <?format ?>the Conformational Space Annealing Method J Lee, IH Lee, J Lee Physical review letters 91 (8), 080201, 2003 | 187 | 2003 |
Structural studies of a bacterial condensin complex reveal ATP-dependent disruption of intersubunit interactions JS Woo, JH Lim, HC Shin, MK Suh, B Ku, KH Lee, K Joo, H Robinson, ... Cell 136 (1), 85-96, 2009 | 171 | 2009 |
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 168 | 2016 |
SVMQA: support–vector-machine-based protein single-model quality assessment B Manavalan, J Lee Bioinformatics 33 (16), 2496-2503, 2017 | 143 | 2017 |
Phase transitions in coupled XY-Ising systems E Granato, JM Kosterlitz, J Lee, MP Nightingale Physical review letters 66 (8), 1090, 1991 | 138 | 1991 |
Monte Carlo study of frustrated XY models on a triangular and square lattice J Lee, JM Kosterlitz, E Granato Physical Review B 43 (13), 11531, 1991 | 135 | 1991 |
First-order melting transition of the hard-disk system J Lee, KJ Strandburg Physical Review B 46 (17), 11190, 1992 | 131 | 1992 |
Computational search for direct band gap silicon crystals IH Lee, J Lee, YJ Oh, S Kim, KJ Chang Physical review B 90 (11), 115209, 2014 | 130 | 2014 |
Prediction of protein tertiary structure using PROFESY, a novel method based on fragment assembly and conformational space annealing J Lee, SY Kim, K Joo, I Kim, J Lee Proteins: Structure, Function, and Bioinformatics 56 (4), 704-714, 2004 | 110 | 2004 |