| MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species M Miya, Y Sato, T Fukunaga, T Sado, JY Poulsen, K Sato, T Minamoto, ... Royal Society open science 2 (7), 150088, 2015 | 1127 | 2015 |
| MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline W Iwasaki, T Fukunaga, R Isagozawa, K Yamada, Y Maeda, TP Satoh, ... Molecular biology and evolution 30 (11), 2531-2540, 2013 | 753 | 2013 |
| MitoFish and MiFish pipeline: a mitochondrial genome database of fish with an analysis pipeline for environmental DNA metabarcoding Y Sato, M Miya, T Fukunaga, T Sado, W Iwasaki Molecular biology and evolution 35 (6), 1553-1555, 2018 | 221 | 2018 |
| Evolutionary origin of the Scombridae (tunas and mackerels): members of a Paleogene adaptive radiation with 14 other pelagic fish families M Miya, M Friedman, TP Satoh, H Takeshima, T Sado, W Iwasaki, ... PloS one 8 (9), e73535, 2013 | 190 | 2013 |
| LncRRIsearch: a web server for lncRNA-RNA interaction prediction integrated with tissue-specific expression and subcellular localization data T Fukunaga, J Iwakiri, Y Ono, M Hamada Frontiers in genetics 10, 462, 2019 | 117 | 2019 |
| RIblast: an ultrafast RNA–RNA interaction prediction system based on a seed-and-extension approach T Fukunaga, M Hamada Bioinformatics 33 (17), 2666-2674, 2017 | 99 | 2017 |
| Representation learning applications in biological sequence analysis H Iuchi, T Matsutani, K Yamada, N Iwano, S Sumi, S Hosoda, S Zhao, ... Computational and Structural Biotechnology Journal 19, 3198-3208, 2021 | 80 | 2021 |
| CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data T Fukunaga, H Ozaki, G Terai, K Asai, W Iwasaki, H Kiryu Genome biology 15, 1-15, 2014 | 80 | 2014 |
| Identification and analysis of ribosome-associated lncRNAs using ribosome profiling data C Zeng, T Fukunaga, M Hamada BMC genomics 19, 1-14, 2018 | 66 | 2018 |
| GroupTracker: Video tracking system for multiple animals under severe occlusion T Fukunaga, S Kubota, S Oda, W Iwasaki Computational biology and chemistry 57, 39-45, 2015 | 45 | 2015 |
| Revealing the microbial assemblage structure in the human gut microbiome using latent Dirichlet allocation S Hosoda, S Nishijima, T Fukunaga, M Hattori, M Hamada Microbiome 8, 1-12, 2020 | 28 | 2020 |
| Targeting the TR4 nuclear receptor-mediated lncTASR/AXL signaling with tretinoin increases the sunitinib sensitivity to better suppress the RCC progression H Shi, Y Sun, M He, X Yang, M Hamada, T Fukunaga, X Zhang, C Chang Oncogene 39 (3), 530-545, 2020 | 25 | 2020 |
| Novel metric for hyperbolic phylogenetic tree embeddings H Matsumoto, T Mimori, T Fukunaga Biology Methods and Protocols 6 (1), bpab006, 2021 | 23 | 2021 |
| Solar-panel and parasol strategies shape the proteorhodopsin distribution pattern in marine Flavobacteriia Y Kumagai, S Yoshizawa, Y Nakajima, M Watanabe, T Fukunaga, ... The ISME Journal 12 (5), 1329-1343, 2018 | 23 | 2018 |
| Rtools: a web server for various secondary structural analyses on single RNA sequences M Hamada, Y Ono, H Kiryu, K Sato, Y Kato, T Fukunaga, R Mori, K Asai Nucleic acids research 44 (W1), W302-W307, 2016 | 21 | 2016 |
| Discovering novel mutation signatures by latent Dirichlet allocation with variational Bayes inference T Matsutani, Y Ueno, T Fukunaga, M Hamada Bioinformatics 35 (22), 4543-4552, 2019 | 15 | 2019 |
| Bioinformatics approaches for unveiling virus-host interactions H Iuchi, J Kawasaki, K Kubo, T Fukunaga, K Hokao, G Yokoyama, ... Computational and Structural Biotechnology Journal 21, 1774-1784, 2023 | 10 | 2023 |
| Inverse Potts model improves accuracy of phylogenetic profiling T Fukunaga, W Iwasaki Bioinformatics 38 (7), 1794-1800, 2022 | 5 | 2022 |
| Umibato: estimation of time-varying microbial interaction using continuous-time regression hidden Markov model S Hosoda, T Fukunaga, M Hamada Bioinformatics 37 (Supplement_1), i16-i24, 2021 | 5 | 2021 |
| Logicome Profiler: Exhaustive detection of statistically significant logic relationships from comparative omics data T Fukunaga, W Iwasaki Plos one 15 (5), e0232106, 2020 | 5 | 2020 |
Wataru IwasakiProfessor, Department of Integrated Biosciences, the University of Tokyo在 k.u-tokyo.ac.jp 的电子邮件经过验证
