Recombination in viruses: mechanisms, methods of study, and evolutionary consequences M Pérez-Losada, M Arenas, JC Galán, F Palero, F González-Candelas Infection, Genetics and Evolution 30, 296-307, 2015 | 357 | 2015 |
Consequences of range contractions and range shifts on molecular diversity M Arenas, N Ray, M Currat, L Excoffier Molecular biology and evolution 29 (1), 207-218, 2012 | 246 | 2012 |
Trends in substitution models of molecular evolution M Arenas Frontiers in genetics 6, 319, 2015 | 183 | 2015 |
Genetic consequences of habitat fragmentation during a range expansion S Mona, N Ray, M Arenas, L Excoffier Heredity 112 (3), 291-299, 2014 | 126 | 2014 |
Forensic genetics and genomics: Much more than just a human affair M Arenas, F Pereira, M Oliveira, N Pinto, AM Lopes, V Gomes, ... PLoS genetics 13 (9), e1006960, 2017 | 110 | 2017 |
The effect of recombination on the reconstruction of ancestral sequences M Arenas, D Posada Genetics 184 (4), 1133-1139, 2010 | 95 | 2010 |
Coalescent simulation of intracodon recombination M Arenas, D Posada Genetics 184 (2), 429-437, 2010 | 76 | 2010 |
Microbial sequence typing in the genomic era M Pérez-Losada, M Arenas, E Castro-Nallar Infection, Genetics and Evolution 63, 346-359, 2018 | 72 | 2018 |
Simulation of molecular data under diverse evolutionary scenarios M Arenas PLoS computational biology 8 (5), e1002495, 2012 | 67 | 2012 |
Ecological connectivity shapes quasispecies structure of RNA viruses in an Antarctic lake A López‐Bueno, A Rastrojo, R Peiró, M Arenas, A Alcamí Molecular Ecology 24 (19), 4812-4825, 2015 | 64 | 2015 |
Recodon: coalescent simulation of coding DNA sequences with recombination, migration and demography M Arenas, D Posada BMC bioinformatics 8, 1-4, 2007 | 63 | 2007 |
Survey of Crimean-Congo hemorrhagic fever enzootic focus, Spain, 2011–2015 A Negredo, MÁ Habela, ER de Arellano, F Diez, F Lasala, P López, ... Emerging Infectious Diseases 25 (6), 1177, 2019 | 58 | 2019 |
Influence of admixture and paleolithic range contractions on current European diversity gradients M Arenas, O François, M Currat, N Ray, L Excoffier Molecular biology and evolution 30 (1), 57-61, 2013 | 55 | 2013 |
High-throughput sequencing (HTS) for the analysis of viral populations M Pérez-Losada, M Arenas, JC Galán, MA Bracho, J Hillung, ... Infection, Genetics and Evolution 80, 104208, 2020 | 49 | 2020 |
Long-distance dispersal shaped patterns of human genetic diversity in Eurasia I Alves, M Arenas, M Currat, A Sramkova Hanulova, VC Sousa, N Ray, ... Molecular biology and evolution 33 (4), 946-958, 2016 | 49 | 2016 |
Maximum-likelihood phylogenetic inference with selection on protein folding stability M Arenas, A Sánchez-Cobos, U Bastolla Molecular biology and evolution 32 (8), 2195-2207, 2015 | 49 | 2015 |
Protein evolution along phylogenetic histories under structurally constrained substitution models M Arenas, HG Dos Santos, D Posada, U Bastolla Bioinformatics 29 (23), 3020-3028, 2013 | 48 | 2013 |
SPLATCHE3: simulation of serial genetic data under spatially explicit evolutionary scenarios including long-distance dispersal M Currat, M Arenas, CS Quilodran, L Excoffier, N Ray Bioinformatics 35 (21), 4480-4483, 2019 | 46 | 2019 |
ProtASR: An Evolutionary Framework for Ancestral Protein Reconstruction with Selection on Folding Stability M Arenas, CC Weber, DA Liberles, U Bastolla Systematic biology 66 (6), 1054-1064, 2017 | 42 | 2017 |
Mutation and recombination in pathogen evolution: Relevance, methods and controversies M Arenas, NM Araujo, C Branco, N Castelhano, E Castro-Nallar, ... Infection, Genetics and Evolution 63, 295-306, 2018 | 39 | 2018 |