Integrative analysis of 111 reference human epigenomes Roadmap Epigenomics Consortium Integrative analysis coordination Kundaje ... Nature 518 (7539), 317-330, 2015 | 6179* | 2015 |
A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014 | 1945 | 2014 |
Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss MS Bansal, EJ Alm, M Kellis Bioinformatics 28 (12), i283-i291, 2012 | 223 | 2012 |
DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony A Wehe, MS Bansal, JG Burleigh, O Eulenstein Bioinformatics 24 (13), 1540-1541, 2008 | 176 | 2008 |
Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees JG Burleigh, MS Bansal, O Eulenstein, S Hartmann, A Wehe, TJ Vision Systematic Biology 60 (2), 117-125, 2011 | 144 | 2011 |
TreeFix: statistically informed gene tree error correction using species trees YC Wu, MD Rasmussen, MS Bansal, M Kellis Systematic biology 62 (1), 110-120, 2013 | 126 | 2013 |
Robinson-foulds supertrees MS Bansal, JG Burleigh, O Eulenstein, D Fernández-Baca Algorithms for molecular biology 5, 1-12, 2010 | 122 | 2010 |
iGTP: a software package for large-scale gene tree parsimony analysis R Chaudhary, MS Bansal, A Wehe, D Fernández-Baca, O Eulenstein BMC bioinformatics 11, 1-7, 2010 | 104 | 2010 |
Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees YC Wu, MD Rasmussen, MS Bansal, M Kellis Genome research 24 (3), 475-486, 2014 | 80 | 2014 |
RANGER-DTL 2.0: rigorous reconstruction of gene-family evolution by duplication, transfer and loss MS Bansal, M Kellis, M Kordi, S Kundu Bioinformatics 34 (18), 3214-3216, 2018 | 78 | 2018 |
Reconciliation Revisted: Handling Multiple Optima when Reconciling with Duplication, Transfer, and Loss MS Bansal, EJ Alm, M Kellis RECOMB 2013, 1-13, 2013 | 73 | 2013 |
Improved gene tree error correction in the presence of horizontal gene transfer MS Bansal, YC Wu, EJ Alm, M Kellis Bioinformatics 31 (8), 1211-1218, 2015 | 68 | 2015 |
Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models MS Bansal, JG Burleigh, O Eulenstein BMC bioinformatics 11, 1-9, 2010 | 67 | 2010 |
Pareto-optimal phylogenetic tree reconciliation R Libeskind-Hadas, YC Wu, MS Bansal, M Kellis Bioinformatics 30 (12), i87-i95, 2014 | 66 | 2014 |
Heuristics for the Gene-Duplication Problem: A Θ(n) Speed-Up for the Local Search MS Bansal, JG Burleigh, O Eulenstein, A Wehe Research in Computational Molecular Biology: 11th Annual International …, 2007 | 64 | 2007 |
The multiple gene duplication problem revisited MS Bansal, O Eulenstein Bioinformatics 24 (13), i132-i138, 2008 | 55 | 2008 |
Improved fully polynomial time approximation scheme for the 0-1 multiple-choice knapsack problem M Bansal, V Venkaiah International Institute of Information Technology Tech Report, 1-9, 2004 | 48 | 2004 |
Comparing and aggregating partially resolved trees MS Bansal, J Dong, D Fernández-Baca Theoretical Computer Science, 2011 | 39 | 2011 |
Systematic inference of highways of horizontal gene transfer in prokaryotes MS Bansal, G Banay, TJ Harlow, JP Gogarten, R Shamir Bioinformatics 29 (5), 571-579, 2013 | 33 | 2013 |
Locating large-scale gene duplication events through reconciled trees: implications for identifying ancient polyploidy events in plants JG Burleigh, MS Bansal, A Wehe, O Eulenstein Journal of Computational Biology 16 (8), 1071-1083, 2009 | 30 | 2009 |