| Integration of biological networks and gene expression data using Cytoscape MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ... Nature protocols 2 (10), 2366-2382, 2007 | 2748 | 2007 |
| Cytoscape: a community-based framework for network modeling S Killcoyne, GW Carter, J Smith, J Boyle Protein networks and pathway analysis, 219-239, 2009 | 250 | 2009 |
| The landscape of selection in 551 esophageal adenocarcinomas defines genomic biomarkers for the clinic AM Frankell, SG Jammula, X Li, G Contino, S Killcoyne, S Abbas, J Perner, ... Nature genetics 51 (3), 506-516, 2019 | 196 | 2019 |
| Somatic mutation distributions in cancer genomes vary with three-dimensional chromatin structure KC Akdemir, VT Le, JM Kim, S Killcoyne, DA King, YP Lin, Y Tian, A Inoue, ... Nature genetics 52 (11), 1178-1188, 2020 | 110 | 2020 |
| Genomic copy number predicts esophageal cancer years before transformation S Killcoyne, E Gregson, DC Wedge, DJ Woodcock, MD Eldridge, ... Nature medicine 26 (11), 1726-1732, 2020 | 108 | 2020 |
| T1DBase: integration and presentation of complex data for type 1 diabetes research EM Hulbert, LJ Smink, EC Adlem, JE Allen, DB Burdick, OS Burren, ... | 94 | 2007 |
| Identification of prognostic phenotypes of esophageal adenocarcinoma in 2 independent cohorts T Sawas, S Killcoyne, PG Iyer, KK Wang, TC Smyrk, JB Kisiel, Y Qin, ... Gastroenterology 155 (6), 1720-1728. e4, 2018 | 86 | 2018 |
| Identification of subtypes of Barrett’s esophagus and esophageal adenocarcinoma based on DNA methylation profiles and integration of transcriptome and genome data SG Jammula, AC Katz-Summercorn, X Li, C Linossi, E Smyth, S Killcoyne, ... Gastroenterology 158 (6), 1682-1697. e1, 2020 | 80 | 2020 |
| Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework S Lewis, A Csordas, S Killcoyne, H Hermjakob, MR Hoopmann, RL Moritz, ... BMC bioinformatics 13, 1-6, 2012 | 70 | 2012 |
| Evolution and progression of Barrett’s oesophagus to oesophageal cancer S Killcoyne, RC Fitzgerald Nature Reviews Cancer 21 (11), 731-741, 2021 | 50 | 2021 |
| Use of a cytosponge biomarker panel to prioritise endoscopic barrett's oesophagus surveillance: a cross-sectional study followed by a real-world prospective pilot ND Pilonis, S Killcoyne, WK Tan, M O'Donovan, S Malhotra, M Tripathi, ... The Lancet Oncology 23 (2), 270-278, 2022 | 46 | 2022 |
| Managing chaos: lessons learned developing software in the life sciences S Killcoyne, J Boyle Computing in science & engineering 11 (6), 20-29, 2009 | 38 | 2009 |
| Limitations of heartburn and other societies’ criteria in Barrett’s screening for detecting de novo esophageal adenocarcinoma T Sawas, SA Zamani, S Killcoyne, A Dullea, KK Wang, PG Iyer, ... Clinical Gastroenterology and Hepatology 20 (8), 1709-1718, 2022 | 26 | 2022 |
| Systems biology driven software design for the research enterprise J Boyle, C Cavnor, S Killcoyne, I Shmulevich BMC bioinformatics 9, 1-15, 2008 | 25 | 2008 |
| Aneuploidy in targeted endoscopic biopsies outperforms other tissue biomarkers in the prediction of histologic progression of Barrett's oesophagus: A multi-centre prospective … AV Hadjinicolaou, SN van Munster, A Achilleos, JS Garcia, S Killcoyne, ... EBioMedicine 56, 2020 | 24 | 2020 |
| Adaptable data management for systems biology investigations J Boyle, H Rovira, C Cavnor, D Burdick, S Killcoyne, I Shmulevich BMC bioinformatics 10, 1-16, 2009 | 23 | 2009 |
| SAMQA: error classification and validation of high-throughput sequenced read data T Robinson, S Killcoyne, R Bressler, J Boyle BMC genomics 12, 1-7, 2011 | 21 | 2011 |
| Methods for visual mining of genomic and proteomic data atlases J Boyle, R Kreisberg, R Bressler, S Killcoyne BMC bioinformatics 13, 1-11, 2012 | 12 | 2012 |
| Genomic instability signals offer diagnostic possibility in early cancer detection S Killcoyne, A Yusuf, RC Fitzgerald Trends in Genetics 37 (11), 966-972, 2021 | 11 | 2021 |
| FIGG: simulating populations of whole genome sequences for heterogeneous data analyses S Killcoyne, A del Sol BMC bioinformatics 15, 1-10, 2014 | 11 | 2014 |
Rebecca FitzgeraldProfessor of Cancer Prevention, Cambridge University在 cam.ac.uk 的电子邮件经过验证
