KMC 3: counting and manipulating k-mer statistics M Kokot, M Długosz, S Deorowicz Bioinformatics 33 (17), 2759-2761, 2017 | 501 | 2017 |
KMC 2: fast and resource-frugal k-mer counting S Deorowicz, M Kokot, S Grabowski, A Debudaj-Grabysz Bioinformatics 31 (10), 1569-1576, 2015 | 303 | 2015 |
Compression of DNA sequence reads in FASTQ format S Deorowicz, S Grabowski Bioinformatics 27 (6), 860-862, 2011 | 196 | 2011 |
Robust relative compression of genomes with random access S Deorowicz, S Grabowski Bioinformatics 27 (21), 2979-2986, 2011 | 155* | 2011 |
FAMSA: Fast and accurate multiple sequence alignment of huge protein families S Deorowicz, A Debudaj-Grabysz, A Gudyś Scientific reports 6 (1), 33964, 2016 | 131 | 2016 |
Data compression for sequencing data S Deorowicz, S Grabowski Algorithms for Molecular Biology 8, 1-13, 2013 | 124 | 2013 |
Correcting spelling errors by modelling their causes S Deorowicz, MG Ciura Zielona Góra: Uniwersytet Zielonogórski, 2005 | 112 | 2005 |
Second step algorithms in the Burrows–Wheeler compression algorithm S Deorowicz Software: Practice and Experience 32 (2), 99-111, 2002 | 108 | 2002 |
DSRC 2—Industry-oriented compression of FASTQ files Ł Roguski, S Deorowicz Bioinformatics 30 (15), 2213-2215, 2014 | 106 | 2014 |
Disk-based k-mer counting on a PC S Deorowicz, A Debudaj-Grabysz, S Grabowski BMC bioinformatics 14, 1-12, 2013 | 95 | 2013 |
Disk-based compression of data from genome sequencing S Grabowski, S Deorowicz, Ł Roguski Bioinformatics 31 (9), 1389-1395, 2015 | 83 | 2015 |
Universal lossless data compression algorithms S Deorowicz Philosophy Dissertation Thesis, Gliwice 38, 13, 2003 | 79 | 2003 |
Genome compression: a novel approach for large collections S Deorowicz, A Danek, S Grabowski Bioinformatics 29 (20), 2572-2578, 2013 | 68 | 2013 |
Revisiting dictionary‐based compression P Skibiński, S Grabowski, S Deorowicz Software: Practice and Experience 35 (15), 1455-1476, 2005 | 67 | 2005 |
Silesia compression corpus S Deorowicz Silesia University,[Online]. Available: http://sun. aei. polsl. pl/~ sdeor …, 2014 | 66 | 2014 |
GDC 2: Compression of large collections of genomes S Deorowicz, A Danek, M Niemiec Scientific reports 5 (1), 11565, 2015 | 64 | 2015 |
miRNEST database: an integrative approach in microRNA search and annotation MW Szcześniak, S Deorowicz, J Gapski, Ł Kaczyński, I Makałowska Nucleic acids research 40 (D1), D198-D204, 2012 | 64 | 2012 |
Improvements to Burrows–Wheeler compression algorithm S Deorowicz Software: Practice and Experience 30 (13), 1465-1483, 2000 | 58 | 2000 |
How to squeeze a lexicon MG Ciura, S Deorowicz Software: Practice and Experience 31 (11), 1077-1090, 2001 | 56* | 2001 |
FaStore: a space-saving solution for raw sequencing data Ł Roguski, I Ochoa, M Hernaez, S Deorowicz Bioinformatics 34 (16), 2748-2756, 2018 | 55 | 2018 |