Regulation of noise in gene expression A Sanchez, S Choubey, J Kondev Annual review of biophysics 42, 469-491, 2013 | 204 | 2013 |
Complex signal processing in synthetic gene circuits using cooperative regulatory assemblies CJ Bashor, N Patel, S Choubey, A Beyzavi, J Kondev, JJ Collins, ... Science 364 (6440), 593-597, 2019 | 135 | 2019 |
Sequence-dependent surface condensation of a pioneer transcription factor on DNA JA Morin, S Wittmann, S Choubey, A Klosin, S Golfier, AA Hyman, ... Nature Physics 18 (3), 271-276, 2022 | 105* | 2022 |
Deciphering transcriptional dynamics in vivo by counting nascent RNA molecules S Choubey, J Kondev, A Sanchez PLoS computational biology 11 (11), e1004345, 2015 | 68 | 2015 |
Stochastic models of transcription: From single molecules to single cells A Sanchez, S Choubey, J Kondev Methods 62 (1), 13-25, 2013 | 67 | 2013 |
Dynamics of embryonic stem cell differentiation inferred from single-cell transcriptomics show a series of transitions through discrete cell states S Jang, S Choubey, L Furchtgott, LN Zou, A Doyle, V Menon, EB Loew, ... elife 6, e20487, 2017 | 51 | 2017 |
Effect of transcription factor resource sharing on gene expression noise D Das, S Dey, RC Brewster, S Choubey PLOS Computational Biology 13 (4), e1005491, 2017 | 46 | 2017 |
Nascent RNA kinetics: Transient and steady state behavior of models of transcription S Choubey Physical Review E 97 (2), 022402, 2018 | 32 | 2018 |
Probing mechanisms of transcription elongation through cell-to-cell variability of RNA polymerase MZ Ali, S Choubey, D Das, RC Brewster Biophysical Journal 118 (7), 1769-1781, 2020 | 17 | 2020 |
Inherent regulatory asymmetry emanating from network architecture in a prevalent autoregulatory motif MZ Ali, V Parisutham, S Choubey, RC Brewster Elife 9, e56517, 2020 | 16 | 2020 |
Distribution of initiation times reveals mechanisms of transcriptional regulation in single cells S Choubey, J Kondev, A Sanchez Biophysical journal 114 (9), 2072-2082, 2018 | 15 | 2018 |
Cell-to-cell variability in organelle abundance reveals mechanisms of organelle biogenesis S Choubey, D Das, S Majumdar Physical Review E 100 (2), 022405, 2019 | 11 | 2019 |
Tunability enhancement of gene regulatory motifs through competition for regulatory protein resources S Das, S Choubey Physical Review E 102 (5), 052410, 2020 | 10 | 2020 |
Decoding the grammar of transcriptional regulation from RNA polymerase measurements: models and their applications MZ Ali, S Choubey Physical Biology 16 (6), 061001, 2019 | 9 | 2019 |
Efficacy of information transmission in cellular communication S Sarkar, MZ Ali, S Choubey Physical Review Research 5 (1), 013092, 2023 | 4 | 2023 |
Temporal Regulation of Organelle Biogenesis S Dixit, N Aniruddha, S Choubey bioRxiv, 2022.12. 30.522312, 2022 | 1 | 2022 |
Governing principles of transcriptional logic out of equilibrium S Dixit, TC Middelkoop, S Choubey Biophysical Journal 123 (8), 1015-1029, 2024 | | 2024 |
Real-time visualization reveals Mycobacterium tuberculosis ESAT-6 disrupts phagosome via fibril-mediated vesiculation D Koiri, M Nandi, AH PM, AJ Bhausaheb, G Meher, A Behura, A Kumar, ... bioRxiv, 2024.04. 19.590309, 2024 | | 2024 |
Role of protein-protein interactions on model chromatin organization P Swain, S Choubey, S Vemparala bioRxiv, 2024.03. 03.583162, 2024 | | 2024 |
Decoding the role of DNA sequence on protein-DNA co-condensation RK Singh, P Swain, M Ganji, S Choubey bioRxiv, 2024.02. 24.581870, 2024 | | 2024 |