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A compendium of RNA-binding motifs for decoding gene regulation D Ray, H Kazan, KB Cook, MT Weirauch, HS Najafabadi, X Li, ... Nature 499 (7457), 172-177, 2013 | 1512 | 2013 |
Global signatures of protein and mRNA expression levels R de Sousa Abreu, LO Penalva, EM Marcotte, C Vogel Molecular BioSystems 5 (12), 1512-1526, 2009 | 1462 | 2009 |
A user's guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS biology 9 (4), e1001046, 2011 | 855 | 2011 |
Sequence signatures and mRNA concentration can explain two‐thirds of protein abundance variation in a human cell line C Vogel, R de Sousa Abreu, D Ko, SY Le, BA Shapiro, SC Burns, ... Molecular systems biology 6 (1), 400, 2010 | 743 | 2010 |
miR-33a/b contribute to the regulation of fatty acid metabolism and insulin signaling A Dávalos, L Goedeke, P Smibert, CM Ramírez, NP Warrier, U Andreo, ... Proceedings of the National Academy of Sciences 108 (22), 9232-9237, 2011 | 742 | 2011 |
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Site identification in high-throughput RNA–protein interaction data PJ Uren, E Bahrami-Samani, SC Burns, M Qiao, FV Karginov, E Hodges, ... Bioinformatics 28 (23), 3013-3020, 2012 | 305 | 2012 |
Before it gets started: regulating translation at the 5′ UTR PR Araujo, K Yoon, D Ko, AD Smith, M Qiao, U Suresh, SC Burns, ... International Journal of Genomics 2012 (1), 475731, 2012 | 293 | 2012 |
MicroRNA-16 and microRNA-424 regulate cell-autonomous angiogenic functions in endothelial cells via targeting vascular endothelial growth factor receptor-2 and fibroblast … A Chamorro-Jorganes, E Araldi, LOF Penalva, D Sandhu, ... Arteriosclerosis, thrombosis, and vascular biology 31 (11), 2595-2606, 2011 | 293 | 2011 |
WTAP is a novel oncogenic protein in acute myeloid leukemia H Bansal, Q Yihua, SP Iyer, S Ganapathy, D Proia, LO Penalva, PJ Uren, ... Leukemia 28 (5), 1171-1174, 2014 | 246 | 2014 |
RNA Binding Protein Sex-Lethal (Sxl) and Control of Drosophila Sex Determination and Dosage Compensation LOF Penalva, L Sánchez Microbiology and molecular biology reviews 67 (3), 343-359, 2003 | 228 | 2003 |
Musashi1 regulates breast tumor cell proliferation and is a prognostic indicator of poor survival XY Wang, LOF Penalva, H Yuan, RI Linnoila, J Lu, H Okano, RI Glazer Molecular cancer 9, 1-12, 2010 | 169 | 2010 |
Zika virus targets glioblastoma stem cells through a SOX2-integrin αvβ5 axis Z Zhu, P Mesci, JA Bernatchez, RC Gimple, X Wang, ST Schafer, ... Cell stem cell 26 (2), 187-204. e10, 2020 | 144 | 2020 |
Genomic analyses of musashi1 downstream targets show a strong association with cancer-related processes R de Sousa Abreu, PC Sanchez-Diaz, C Vogel, SC Burns, D Ko, ... Journal of Biological Chemistry 284 (18), 12125-12135, 2009 | 112 | 2009 |
Functional genomics analyses of RNA-binding proteins reveal the splicing regulator SNRPB as an oncogenic candidate in glioblastoma BR Correa, PR de Araujo, M Qiao, SC Burns, C Chen, R Schlegel, ... Genome Biology 17, 1-16, 2016 | 95 | 2016 |
Riborex: fast and flexible identification of differential translation from Ribo-seq data W Li, W Wang, PJ Uren, LOF Penalva, AD Smith Bioinformatics 33 (11), 1735-1737, 2017 | 94 | 2017 |
Genomic analyses of the RNA-binding protein Hu antigen R (HuR) identify a complex network of target genes and novel characteristics of its binding sites PJ Uren, SC Burns, J Ruan, KK Singh, AD Smith, LOF Penalva Journal of Biological Chemistry 286 (43), 37063-37066, 2011 | 93 | 2011 |
Integrating shotgun proteomics and mRNA expression data to improve protein identification SR Ramakrishnan, C Vogel, JT Prince, R Wang, Z Li, LO Penalva, ... Bioinformatics 25 (11), 1397-1403, 2009 | 91 | 2009 |
The oncogenic RNA-binding protein Musashi1 is regulated by tumor suppressor miRNAs DT Vo, M Qiao, AD Smith, SC Burns, AJ Brenner, LOF Penalva RNA biology 8 (5), 817-828, 2011 | 89 | 2011 |