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Variation graph toolkit improves read mapping by representing genetic variation in the reference E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ... Nature biotechnology 36 (9), 875-879, 2018 | 541 | 2018 |
A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023 | 356 | 2023 |
A robust benchmark for detection of germline large deletions and insertions JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ... Nature biotechnology 38 (11), 1347-1355, 2020 | 330* | 2020 |
WhatsHap: fast and accurate read-based phasing M Martin, M Patterson, S Garg, S O Fischer, N Pisanti, GW Klau, ... BioRxiv, 085050, 2016 | 258 | 2016 |
Pangenome graphs JM Eizenga, AM Novak, JA Sibbesen, S Heumos, A Ghaffaari, G Hickey, ... Annual review of genomics and human genetics 21, 139-162, 2020 | 193 | 2020 |
Chromosome-scale, haplotype-resolved assembly of human genomes S Garg, A Fungtammasan, A Carroll, M Chou, A Schmitt, X Zhou, S Mac, ... Nature biotechnology 39 (3), 309-312, 2021 | 158* | 2021 |
Semi-automated assembly of high-quality diploid human reference genomes ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ... Nature 611 (7936), 519-531, 2022 | 107 | 2022 |
Dense and accurate whole-chromosome haplotyping of individual genomes D Porubsky, S Garg, AD Sanders, JO Korbel, V Guryev, PM Lansdorp, ... Nature communications 8 (1), 1293, 2017 | 90 | 2017 |
Computational methods for chromosome-scale haplotype reconstruction S Garg Genome biology 22 (1), 101, 2021 | 70 | 2021 |
A graph-based approach to diploid genome assembly S Garg, M Rautiainen, AM Novak, E Garrison, R Durbin, T Marschall Bioinformatics 34 (13), i105-i114, 2018 | 68 | 2018 |
A diploid assembly-based benchmark for variants in the major histocompatibility complex CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ... Nature communications 11 (1), 4794, 2020 | 60 | 2020 |
Enabling large-scale genome editing at repetitive elements by reducing DNA nicking CJ Smith, O Castanon, K Said, V Volf, P Khoshakhlagh, A Hornick, ... Nucleic acids research 48 (9), 5183-5195, 2020 | 52 | 2020 |
Recombination between heterologous human acrocentric chromosomes A Guarracino, S Buonaiuto, LG de Lima, T Potapova, A Rhie, S Koren, ... Nature 617 (7960), 335-343, 2023 | 45 | 2023 |
Read-based phasing of related individuals S Garg, M Martin, T Marschall Bioinformatics 32 (12), i234-i242, 2016 | 45 | 2016 |
Increased mutation and gene conversion within human segmental duplications MR Vollger, PC Dishuck, WT Harvey, WS DeWitt, X Guitart, ME Goldberg, ... Nature 617 (7960), 325-334, 2023 | 35 | 2023 |
O Fischer M Martin, M Patterson, S Garg S., Pisanti, N., Klau, GW, Schöenhuth, A., & Marschall, 2016 | 29 | 2016 |
VividhaVahana: smartphone based vehicle classification and its applications in developing region S Garg, P Singh, P Ramanathan, R Sen Proceedings of the 11th International Conference on Mobile and Ubiquitous …, 2014 | 29 | 2014 |
A haplotype-aware de novo assembly of related individuals using pedigree sequence graph S Garg, J Aach, H Li, I Sebenius, R Durbin, G Church Bioinformatics 36 (8), 2385-2392, 2020 | 27 | 2020 |
Gaps and complex structurally variant loci in phased genome assemblies D Porubsky, MR Vollger, WT Harvey, AN Rozanski, P Ebert, G Hickey, ... Genome research 33 (4), 496-510, 2023 | 20 | 2023 |