Tracking changes in SARS-CoV-2 Spike: evidence that D614G increases infectivity of the COVID-19 virus B Korber, WM Fischer, S Gnanakaran, H Yoon, J Theiler, W Abfalterer, ... Cell 182 (4), 812-827. e19, 2020 | 4291 | 2020 |
Molecular evidence for the early evolution of photosynthesis J Xiong, WM Fischer, K Inoue, M Nakahara, CE Bauer Science 289 (5485), 1724-30, 2000 | 595 | 2000 |
Polyvalent vaccines for optimal coverage of potential T-cell epitopes in global HIV-1 variants W Fischer, S Perkins, J Theiler, T Bhattacharya, K Yusim, R Funkhouser, ... Nature medicine 13 (1), 100-106, 2007 | 525 | 2007 |
Spike mutation pipeline reveals the emergence of a more transmissible form of SARS-CoV-2 B Korber, W Fischer, SG Gnanakaran, H Yoon, J Theiler, W Abfalterer, ... bioRxiv, 2020 | 489 | 2020 |
Mosaic HIV-1 vaccines expand the breadth and depth of cellular immune responses in rhesus monkeys DH Barouch, KL O'Brien, NL Simmons, SL King, P Abbink, LF Maxfield, ... Nature medicine 16 (3), 319-323, 2010 | 462 | 2010 |
SARS-CoV-2 variant B. 1.1. 7 is susceptible to neutralizing antibodies elicited by ancestral Spike vaccines X Shen, H Tang, C McDanal, K Wagh, W Fischer, J Theiler, H Yoon, D Li, ... Cell host & microbe 29 (4), 529-539. e3, 2021 | 423 | 2021 |
Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing W Fischer, VV Ganusov, EE Giorgi, PT Hraber, BF Keele, T Leitner, ... PLoS One 5 (8), e12303, 2010 | 347 | 2010 |
Mosaic vaccines elicit CD8+ T lymphocyte responses that confer enhanced immune coverage of diverse HIV strains in monkeys S Santra, HX Liao, R Zhang, M Muldoon, S Watson, W Fischer, J Theiler, ... Nature medicine 16 (3), 324-328, 2010 | 293 | 2010 |
HIV sequence compendium 2009 C Kuiken, T Leitner, B Foley, B Hahn, P Marx, F McCutchan, S Wolinsky, ... Document LA-UR, 06-0680, 2009 | 293* | 2009 |
Immunological and virological mechanisms of vaccine-mediated protection against SIV and HIV M Roederer, BF Keele, SD Schmidt, RD Mason, HC Welles, W Fischer, ... Nature 505 (7484), 502-508, 2014 | 153 | 2014 |
Defining the risk of SARS-CoV-2 variants on immune protection Nature 605 (7911), 640-652, 2022 | 137 | 2022 |
Human leukocyte antigen–associated sequence polymorphisms in hepatitis C virus reveal reproducible immune responses and constraints on viral evolution J Timm, B Li, MG Daniels, T Bhattacharya, LL Reyor, R Allgaier, ... Hepatology 46 (2), 339-349, 2007 | 121 | 2007 |
Human APOBEC3 induced mutation of human immunodeficiency virus type-1 contributes to adaptation and evolution in natural infection EY Kim, R Lorenzo-Redondo, SJ Little, YS Chung, PK Phalora, IM Berry, ... PLoS pathogens 10 (7), e1004281, 2014 | 111 | 2014 |
HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens W Fischer, EE Giorgi, S Chakraborty, K Nguyen, T Bhattacharya, J Theiler, ... Cell host & microbe 29 (7), 1093-1110, 2021 | 85 | 2021 |
Expanded breadth of the T-cell response to mosaic human immunodeficiency virus type 1 envelope DNA vaccination WP Kong, L Wu, TC Wallstrom, W Fischer, ZY Yang, SY Ko, NL Letvin, ... Journal of virology 83 (5), 2201-2215, 2009 | 81 | 2009 |
Evidence from small-subunit ribosomal RNA sequences for a fungal origin of Microsporidia WM Fischer, JD Palmer Molecular Phylogenetics and Evolution 36 (3), 606–622, 2005 | 65 | 2005 |
Web-based design and evaluation of T-cell vaccine candidates J Thurmond, H Yoon, C Kuiken, K Yusim, S Perkins, J Theiler, ... Bioinformatics 24 (14), 1639-1640, 2008 | 62 | 2008 |
A multiple-alignment based primer design algorithm for genetically highly variable DNA targets. J Brodin, M Krishnamoorthy, G Athreya, W Fischer, PT Hraber, C Gleasner, ... BMC bioinformatics 14 (1), 255, 2013 | 51 | 2013 |
T cell-based strategies for HIV-1 vaccines B Korber, W Fischer Human Vaccines & Immunotherapeutics 16 (3), 713-722, 2020 | 48 | 2020 |
Rare HIV-1 transmitted/founder lineages identified by deep viral sequencing contribute to rapid shifts in dominant quasispecies during acute and early infection GH Kijak, E Sanders-Buell, AL Chenine, MA Eller, N Goonetilleke, ... PLoS Pathogens 13 (7), e1006510, 2017 | 47 | 2017 |