| scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data J Alquicira-Hernandez, A Sathe, HP Ji, Q Nguyen, JE Powell Genome biology 20, 1-17, 2019 | 309 | 2019 |
| Single-cell genomic characterization reveals the cellular reprogramming of the gastric tumor microenvironment A Sathe, SM Grimes, BT Lau, J Chen, C Suarez, RJ Huang, G Poultsides, ... Clinical Cancer Research 26 (11), 2640-2653, 2020 | 248 | 2020 |
| An expanded universe of cancer targets WC Hahn, JS Bader, TP Braun, A Califano, PA Clemons, BJ Druker, ... Cell 184 (5), 1142-1155, 2021 | 158 | 2021 |
| Targeting the PI3K/AKT/mTOR pathway in bladder cancer A Sathe, R Nawroth Urothelial carcinoma: Methods and protocols, 335-350, 2018 | 150 | 2018 |
| Joint single cell DNA-seq and RNA-seq of gastric cancer cell lines reveals rules of in vitro evolution N Andor, BT Lau, C Catalanotti, A Sathe, M Kubit, J Chen, C Blaj, ... NAR Genomics and Bioinformatics 2 (2), lqaa016, 2020 | 74 | 2020 |
| Single-cell analysis can define distinct evolution of tumor sites in follicular lymphoma S Haebe, T Shree, A Sathe, G Day, DK Czerwinski, SM Grimes, HJ Lee, ... Blood, The Journal of the American Society of Hematology 137 (21), 2869-2880, 2021 | 63 | 2021 |
| CDK4/6 inhibition controls proliferation of bladder cancer and transcription of RB1 A Sathe, N Koshy, SC Schmid, M Thalgott, SM Schwarzenböck, ... The Journal of urology 195 (3), 771-779, 2016 | 59 | 2016 |
| Parallel PI3K, AKT and mTOR inhibition is required to control feedback loops that limit tumor therapy A Sathe, G Chalaud, I Oppolzer, KY Wong, M von Busch, SC Schmid, ... PloS one 13 (1), e0190854, 2018 | 58 | 2018 |
| Colorectal Cancer Metastases in the Liver Establish Immunosuppressive Spatial Networking between Tumor-Associated SPP1+ Macrophages and Fibroblasts A Sathe, K Mason, SM Grimes, Z Zhou, BT Lau, X Bai, A Su, X Tan, ... Clinical Cancer Research 29 (1), 244-260, 2023 | 49 | 2023 |
| Integrative single-cell analysis of allele-specific copy number alterations and chromatin accessibility in cancer CY Wu, BT Lau, HS Kim, A Sathe, SM Grimes, HP Ji, NR Zhang Nature biotechnology 39 (10), 1259-1269, 2021 | 46 | 2021 |
| Mutant PIK3CA controls DUSP1-dependent ERK 1/2 activity to confer response to AKT target therapy A Sathe, F Guerth, MV Cronauer, MM Heck, M Thalgott, JE Gschwend, ... British journal of cancer 111 (11), 2103-2113, 2014 | 41 | 2014 |
| CDK4/6 inhibitors in cancer therapy: a novel treatement strategy for bladder cancer Q Pan, A Sathe, PC Black, PJ Goebell, AM Kamat, B Schmitz-Draeger, ... Bladder cancer 3 (2), 79-88, 2017 | 40 | 2017 |
| Non-invasive imaging of engineered human tumors in the living chicken embryo B Jefferies, F Lenze, A Sathe, N Truong, M Anton, R von Eisenhart-Rothe, ... Scientific Reports 7 (1), 4991, 2017 | 33 | 2017 |
| Functional genomics identifies predictive markers and clinically actionable resistance mechanisms to CDK4/6 inhibition in bladder cancer Z Tong, A Sathe, B Ebner, P Qi, C Veltkamp, JE Gschwend, PS Holm, ... Journal of Experimental & Clinical Cancer Research 38, 1-14, 2019 | 30 | 2019 |
| Applying the chicken embryo chorioallantoic membrane assay to study treatment approaches in urothelial carcinoma MA Skowron, A Sathe, A Romano, MJ Hoffmann, WA Schulz, ... Urologic Oncology: Seminars and Original Investigations 35 (9), 544. e11-544 …, 2017 | 26 | 2017 |
| Joint single cell DNA-Seq and RNA-Seq of cancer reveals subclonal signatures of genomic instability and gene expression N Andor, BT Lau, C Catalanotti, V Kumar, A Sathe, K Belhocine, ... Biorxiv, 445932, 2018 | 19 | 2018 |
| Wntless promotes bladder cancer growth and acts synergistically as a molecular target in combination with cisplatin SC Schmid, A Sathe, F Guerth, AK Seitz, MM Heck, T Maurer, ... Urologic Oncology: Seminars and Original Investigations 35 (9), 544. e1-544. e10, 2017 | 17 | 2017 |
| scPred: Cell type prediction at single-cell resolution J Alquicira-Hernández, A Sathe, HP Ji, Q Nguyen, JE Powell bioRxiv, 369538, 2018 | 16 | 2018 |
| Direct measurement of engineered cancer mutations and their transcriptional phenotypes in single cells HS Kim, SM Grimes, T Chen, A Sathe, BT Lau, GH Hwang, S Bae, HP Ji Nature Biotechnology, 1-9, 2023 | 8 | 2023 |
| Site to site comparison of follicular lymphoma biopsies by single cell RNA sequencing S Haebe, T Shree, A Sathe, G Day, HJ Lee, DK Czerwinski, S Grimes, H Ji, ... Blood 134, 297, 2019 | 7 | 2019 |
