Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 843 | 2018 |
Efficient coalescent simulation and genealogical analysis for large sample sizes J Kelleher, AM Etheridge, G McVean PLoS computational biology 12 (5), e1004842, 2016 | 628 | 2016 |
Inferring whole-genome histories in large population datasets J Kelleher, Y Wong, AW Wohns, C Fadil, PK Albers, G McVean Nature genetics 51 (9), 1330-1338, 2019 | 229 | 2019 |
Efficient ancestry and mutation simulation with msprime 1.0 F Baumdicker, G Bisschop, D Goldstein, G Gower, AP Ragsdale, ... Genetics 220 (3), iyab229, 2022 | 160 | 2022 |
Tree‐sequence recording in SLiM opens new horizons for forward‐time simulation of whole genomes BC Haller, J Galloway, J Kelleher, PW Messer, PL Ralph Molecular ecology resources 19 (2), 552-566, 2019 | 158 | 2019 |
Efficient pedigree recording for fast population genetics simulation J Kelleher, KR Thornton, J Ashander, PL Ralph PLoS computational biology 14 (11), e1006581, 2018 | 149 | 2018 |
GA4GH: International policies and standards for data sharing across genomic research and healthcare HL Rehm, AJH Page, L Smith, JB Adams, G Alterovitz, LJ Babb, ... Cell genomics 1 (2), 2021 | 144 | 2021 |
A community-maintained standard library of population genetic models JR Adrion, CB Cole, N Dukler, JG Galloway, AL Gladstein, G Gower, ... elife 9, e54967, 2020 | 125 | 2020 |
A unified genealogy of modern and ancient genomes AW Wohns, Y Wong, B Jeffery, A Akbari, S Mallick, R Pinhasi, N Patterson, ... Science 375 (6583), eabi8264, 2022 | 83 | 2022 |
An accurate and scalable collaborative recommender J Kelleher, D Bridge Artificial Intelligence Review 21 (3), 193-213, 2004 | 69 | 2004 |
A new model for extinction and recolonization in two dimensions: quantifying phylogeography NH Barton, J Kelleher, AM Etheridge Evolution 64 (9), 2701-2715, 2010 | 62 | 2010 |
Genome graphs AM Novak, G Hickey, E Garrison, S Blum, A Connelly, A Dilthey, ... BioRxiv, 101378, 2017 | 55 | 2017 |
Genetic hitchhiking in spatially extended populations NH Barton, AM Etheridge, J Kelleher, A Véber Theoretical population biology 87, 75-89, 2013 | 53 | 2013 |
Efficiently summarizing relationships in large samples: a general duality between statistics of genealogies and genomes P Ralph, K Thornton, J Kelleher Genetics 215 (3), 779-797, 2020 | 50 | 2020 |
Accounting for long-range correlations in genome-wide simulations of large cohorts D Nelson, J Kelleher, AP Ragsdale, C Moreau, G McVean, S Gravel PLoS genetics 16 (5), e1008619, 2020 | 45 | 2020 |
Inference in two dimensions: allele frequencies versus lengths of shared sequence blocks NH Barton, AM Etheridge, J Kelleher, A Véber Theoretical population biology 87, 105-119, 2013 | 42 | 2013 |
Experiments in sparsity reduction: Using clustering in collaborative recommenders D Bridge, J Kelleher Irish Conference on Artificial Intelligence and Cognitive Science, 144-149, 2002 | 36 | 2002 |
Generating all partitions: a comparison of two encodings J Kelleher, B O'Sullivan arXiv preprint arXiv:0909.2331, 2009 | 33 | 2009 |
Coalescent simulation with msprime J Kelleher, K Lohse Statistical Population Genomics 986, 191-230, 2020 | 28 | 2020 |
Coalescent simulation in continuous space: Algorithms for large neighbourhood size J Kelleher, AM Etheridge, NH Barton Theoretical population biology 95, 13-23, 2014 | 26 | 2014 |