| PhaTYP: predicting the lifestyle for bacteriophages using BERT J Shang, X Tang, Y Sun Briefings in Bioinformatics 24 (1), bbac487, 2023 | 72 | 2023 |
| Accurate identification of bacteriophages from metagenomic data using Transformer J Shang, X Tang, R Guo, Y Sun Briefings in Bioinformatics 23 (4), bbac258, 2022 | 34 | 2022 |
| PhaBOX: a web server for identifying and characterizing phage contigs in metagenomic data J Shang, C Peng, H Liao, X Tang, Y Sun Bioinformatics advances 3 (1), vbad101, 2023 | 24 | 2023 |
| PLASMe: a tool to identify PLASMid contigs from short-read assemblies using transformer X Tang, J Shang, Y Ji, Y Sun Nucleic Acids Research 51 (15), e83-e83, 2023 | 20 | 2023 |
| Fast and accurate microRNA search using CNN X Tang, Y Sun BMC bioinformatics 20 (Suppl 23), 646, 2019 | 17 | 2019 |
| VirBot: an RNA viral contig detector for metagenomic data G Chen, X Tang, M Shi, Y Sun Bioinformatics 39 (3), btad093, 2023 | 12 | 2023 |
| HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer Y Ji, J Shang, X Tang, Y Sun Bioinformatics 39 (5), btad283, 2023 | 9 | 2023 |
| PhaVIP: Phage VIrion Protein classification based on chaos game representation and Vision Transformer J Shang, C Peng, X Tang, Y Sun Bioinformatics 39 (Supplement_1), i30-i39, 2023 | 6 | 2023 |
| RdRp-based sensitive taxonomic classification of RNA viruses for metagenomic data X Tang, J Shang, Y Sun Briefings in Bioinformatics 23 (2), bbac011, 2022 | 4 | 2022 |
| PhaGenus: genus-level classification of bacteriophages using a Transformer model J Guan, C Peng, J Shang, X Tang, Y Sun Briefings in Bioinformatics 24 (6), bbad408, 2023 | 2 | 2023 |
| Critical Assessment of Whole Genome and Viral Enrichment Shotgun Metagenome on the Characterization of Stool Total Virome in Hepatocellular Carcinoma Patients F Zhang, A Gia, G Chen, L Gong, J Behary, GL Hold, A Zekry, X Tang, ... Viruses 15 (1), 53, 2022 | 2 | 2022 |
| Accurate and efficient protein embedding using multi-teacher distillation learning J Shang, C Peng, Y Ji, J Guan, D Cai, X Tang, Y Sun Bioinformatics 40 (9), btae567, 2024 | | 2024 |
| PhaGO: Protein function annotation for bacteriophages by integrating the genomic context J Guan, Y Ji, C Peng, W Zou, X Tang, J Shang, Y Sun arXiv preprint arXiv:2408.06402, 2024 | | 2024 |
| SegVir: Reconstruction of complete segmented RNA viral genomes from metatranscriptomes X Tang, J Shang, G Chen, KHK Chan, M Shi, Y Sun Molecular Biology and Evolution 41 (8), msae171, 2024 | | 2024 |
| PlasGO: enhancing GO-based function prediction for plasmid-encoded proteins based on genetic structure Y Ji, J Shang, J Guan, W Zou, H Liao, X Tang, Y Sun bioRxiv, 2024.07. 03.602011, 2024 | | 2024 |
Yanni SunCity University of Hong Kong在 cityu.edu.hk 的电子邮件经过验证
