| Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes X Peng, SE Wilken, TS Lankiewicz, SP Gilmore, JL Brown, JK Henske, ... Nature microbiology 6 (4), 499-511, 2021 | 142 | 2021 |
| Top-down enrichment guides in formation of synthetic microbial consortia for biomass degradation SP Gilmore, TS Lankiewicz, SE Wilken, JL Brown, JA Sexton, JK Henske, ... ACS synthetic biology 8 (9), 2174-2185, 2019 | 84 | 2019 |
| Metabolic characterization of anaerobic fungi provides a path forward for bioprocessing of crude lignocellulose JK Henske, SE Wilken, KV Solomon, CR Smallwood, V Shutthanandan, ... Biotechnology and Bioengineering 115 (4), 874-884, 2018 | 65 | 2018 |
| The importance of sourcing enzymes from non-conventional fungi for metabolic engineering & biomass breakdown S Seppälä, SE Wilken, D Knop, KV Solomon, MA O’Malley Metabolic engineering, 2017 | 62 | 2017 |
| Experimentally validated reconstruction and analysis of a genome-scale metabolic model of an anaerobic Neocallimastigomycota fungus SE Wilken, JM Monk, PA Leggieri, CE Lawson, TS Lankiewicz, S Seppälä, ... Msystems 6 (1), 10.1128/msystems. 00002-21, 2021 | 42 | 2021 |
| Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi S Seppälä, TS Lankiewicz, M Saxena, JK Henske, AA Salamov, ... Metabolic engineering communications 10, e00107, 2020 | 26 | 2020 |
| In silico identification of microbial partners to form consortia with anaerobic fungi SE Wilken, M Saxena, LR Petzold, MA O’Malley Processes 6 (1), 7, 2018 | 25 | 2018 |
| Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes. Nat Microbiol 6: 499–511 X Peng, SE Wilken, TS Lankiewicz, SP Gilmore, JL Brown, JK Henske, ... | 22 | 2021 |
| Linking ‘omics’ to function unlocks the biotech potential of non-model fungi CL Swift, IA Podolsky, TS Lankiewicz, S Seppälä, MA O'Malley Current Opinion in Systems Biology 14, 9-17, 2019 | 21 | 2019 |
| An Arduino based automatic pressure evaluation system to quantify growth of non‐model anaerobes in culture SE Wilken, PA Leggieri, C Kerdman‐Andrade, M Reilly, MK Theodorou, ... AIChE Journal 66 (12), e16540, 2020 | 10 | 2020 |
| Top-down enrichment guides in formation of synthetic microbial consortia for biomass degradation. ACS Synth Biol 8: 2174–2185 SP Gilmore, TS Lankiewicz, SE Wilken, JL Brown, JA Sexton, JK Henske, ... | 9 | 2019 |
| COBREXA. jl: constraint-based reconstruction and exascale analysis M Kratochvíl, L Heirendt, SE Wilken, T Pusa, S Arreckx, A Noronha, ... Bioinformatics 38 (4), 1171-1172, 2022 | 8 | 2022 |
| Interrogating the effect of enzyme kinetics on metabolism using differentiable constraint-based models M Besançon, M Kratochvíl, CAF Kuate, C Trefois, W Gu, O Ebenhöh Metabolic engineering 74, 72-82, 2022 | 7 | 2022 |
| Experimentally validated reconstruction and analysis of a genome-scale metabolic model of an anaerobic SE Wilken, JM Monk, PA Leggieri, CE Lawson, TS Lankiewicz, S Seppälä, ... Neocallimastigomycota, 2021 | 6 | 2021 |
| The view of microbes as energy converters illustrates the trade-off between growth rate and yield SE Wilken, VV Frazão, NP Saadat, O Ebenhöh Biochemical Society Transactions 49 (4), 1663-1674, 2021 | 5 | 2021 |
| Computationally efficient formulation of stochastic dynamical control within the context of switching probabilistic graphical models E Wilken PQDT-Global, 2015 | 5 | 2015 |
| Eigenvector analysis for the ranking of control loop importance SJ Streicher, C Sandrock Computer Aided Chemical Engineering 33, 835-840, 2014 | 5 | 2014 |
| Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes. Nat Microbiol. 2021; 6: 499–511 X Peng, SE Wilken, TS Lankiewicz, SP Gilmore, JL Brown, JK Henske, ... | 5 | |
| FBCModelTests. jl M KRATOCHVIL, SE Wilken | | 2023 |
| Developing a systems biology framework to engineer anaerobic gut fungi SE Wilken UC Santa Barbara, 2020 | | 2020 |
