| SYNTHESIS: Plastic parasites: sophisticated strategies for survival and reproduction? SE Reece, RS Ramiro, DH Nussey Evolutionary applications 2 (1), 11-23, 2009 | 129 | 2009 |
| The Genetic Basis of Escherichia coli Pathoadaptation to Macrophages M Miskinyte, A Sousa, RS Ramiro, JAM de Sousa, J Kotlinowski, ... PLoS pathogens 9 (12), e1003802, 2013 | 89 | 2013 |
| Low mutational load and high mutation rate variation in gut commensal bacteria RS Ramiro, P Durão, C Bank, I Gordo PLoS biology 18 (3), e3000617, 2020 | 67 | 2020 |
| Diet leaves a genetic signature in a keystone member of the gut microbiota T Dapa, RS Ramiro, MF Pedro, I Gordo, KB Xavier Cell Host & Microbe 30 (2), 183-199. e10, 2022 | 57 | 2022 |
| Sex and death: the effects of innate immune factors on the sexual reproduction of malaria parasites RS Ramiro, J Alpedrinha, L Carter, A Gardner, SE Reece PLoS Pathogens 7 (3), e1001309, 2011 | 50 | 2011 |
| A Mutational Hotspot and Strong Selection Contribute to the Order of Mutations Selected for during Escherichia coli Adaptation to the Gut M Lourenço, RS Ramiro, D Güleresi, J Barroso-Batista, KB Xavier, I Gordo, ... PLoS genetics 12 (11), e1006420, 2016 | 43 | 2016 |
| Recurrent reverse evolution maintains polymorphism after strong bottlenecks in commensal gut bacteria A Sousa, RS Ramiro, J Barroso-Batista, D Güleresi, M Lourenço, I Gordo Molecular biology and evolution 34 (11), 2879-2892, 2017 | 42 | 2017 |
| Molecular evolution and phylogenetics of rodent malaria parasites RS Ramiro, SE Reece, DJ Obbard BMC evolutionary biology 12, 1-11, 2012 | 41 | 2012 |
| Facilitation through altered resource availability in a mixed‐species rodent malaria infection RS Ramiro, LC Pollitt, N Mideo, SE Reece Ecology letters 19 (9), 1041-1050, 2016 | 39 | 2016 |
| Evolution of commensal bacteria in the intestinal tract of mice A Sousa, N Frazão, RS Ramiro, I Gordo Current opinion in microbiology 38, 114-121, 2017 | 38 | 2017 |
| Host miRNA-21 promotes liver dysfunction by targeting small intestinal Lactobacillus in mice AA Santos, MB Afonso, RS Ramiro, D Pires, M Pimentel, RE Castro, ... Gut Microbes 12 (1), 1840766, 2020 | 36 | 2020 |
| Macrophage adaptation leads to parallel evolution of genetically diverse Escherichia coli small‐colony variants with increased fitness in vivo and antibiotic … RS Ramiro, H Costa, I Gordo Evolutionary applications 9 (8), 994-1004, 2016 | 27 | 2016 |
| Hybridization and pre-zygotic reproductive barriers in Plasmodium RS Ramiro, SM Khan, B Franke-Fayard, CJ Janse, DJ Obbard, SE Reece Proceedings of the Royal Society B: Biological Sciences 282 (1806), 20143027, 2015 | 26 | 2015 |
| Genomic prediction of wheat grain yield using machine learning MS Sirsat, PR Oblessuc, RS Ramiro Agriculture 12 (9), 1406, 2022 | 13 | 2022 |
| Host lung microbiota promotes malaria-associated acute respiratory distress syndrome D Mukherjee, ÂF Chora, JC Lone, RS Ramiro, B Blankenhaus, K Serre, ... Nature Communications 13 (1), 3747, 2022 | 7 | 2022 |
| Radial expansion facilitates the maintenance of double antibiotic resistances P Durão, RS Ramiro, C Pereira, J Jurič, D Pereira, I Gordo Antimicrobial Agents and Chemotherapy 64 (9), 10.1128/aac. 00668-20, 2020 | 3 | 2020 |
| Plastic parasites: sophisticated strategies for survival and reproduction? Evol Appl. 2009; 2: 11–23 SE Reece, RS Ramiro, DH Nussey | 2 | |
| Integrating multi-scale approaches for predicting microbiome ecology and evolution A Quagliariello, RS Ramiro, A Couce, ME Martino Frontiers in Microbiology 13, 1045045, 2022 | | 2022 |
| Intestinal dysbiosis fuels liver disease progression via NLRP3 in the Mdr2−/− mouse model of primary sclerosing cholangitis AA Santos, MB Afonso, RS Ramiro, RE Castro, CMP Rodrigues Journal of Hepatology 70, e81-e132, 2019 | | 2019 |
| PLASMODIUM AND HOST MICROBIOTA: FRIEND OR FOE? D Mukherjee, A Chora, R Ramiro, I Gordo, M Mota AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE 99 (4), 669-669, 2018 | | 2018 |
