Nucleic acid detection with CRISPR-Cas13a/C2c2 JS Gootenberg, OO Abudayyeh, JW Lee, P Essletzbichler, AJ Dy, J Joung, ... Science 356 (6336), 438-442, 2017 | 2847 | 2017 |
Potential role of intratumor bacteria in mediating tumor resistance to the chemotherapeutic drug gemcitabine LT Geller, M Barzily-Rokni, T Danino, OH Jonas, N Shental, D Nejman, ... Science 357 (6356), 1156-1160, 2017 | 1349 | 2017 |
Bacteriophage control of Shiga toxin 1 production and release by Escherichia coli PL Wagner, J Livny, MN Neely, DWK Acheson, DI Friedman, MK Waldor Molecular microbiology 44 (4), 957-970, 2002 | 305 | 2002 |
A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research M Poyet, M Groussin, SM Gibbons, J Avila-Pacheco, X Jiang, SM Kearney, ... Nature medicine 25 (9), 1442-1452, 2019 | 283 | 2019 |
Simultaneous generation of many RNA-seq libraries in a single reaction AA Shishkin, G Giannoukos, A Kucukural, D Ciulla, M Busby, C Surka, ... Nature methods 12 (4), 323-325, 2015 | 274 | 2015 |
How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes? BJ Haas, M Chin, C Nusbaum, BW Birren, J Livny BMC genomics 13, 1-11, 2012 | 274 | 2012 |
Distribution of Centromere-Like parS Sites in Bacteria: Insights from Comparative Genomics J Livny, Y Yamaichi, MK Waldor Journal of bacteriology 189 (23), 8693-8703, 2007 | 273 | 2007 |
Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes G Giannoukos, DM Ciulla, K Huang, BJ Haas, J Izard, JZ Levin, J Livny, ... Genome biology 13, 1-13, 2012 | 272 | 2012 |
High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs J Livny, H Teonadi, M Livny, MK Waldor PloS one 3 (9), e3197, 2008 | 272 | 2008 |
RNA-Seq-based monitoring of infection-linked changes in Vibrio cholerae gene expression A Mandlik, J Livny, WP Robins, JM Ritchie, JJ Mekalanos, MK Waldor Cell host & microbe 10 (2), 165-174, 2011 | 255 | 2011 |
Identification of small RNAs in diverse bacterial species J Livny, MK Waldor Current opinion in microbiology 10 (2), 96-101, 2007 | 249 | 2007 |
Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2 J Livny, A Brencic, S Lory, MK Waldor Nucleic acids research 34 (12), 3484-3493, 2006 | 238 | 2006 |
TargetRNA2: identifying targets of small regulatory RNAs in bacteria MB Kery, M Feldman, J Livny, B Tjaden Nucleic acids research 42 (W1), W124-W129, 2014 | 218 | 2014 |
Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA depletion and parallel sequencing JM Liu, J Livny, MS Lawrence, MD Kimball, MK Waldor, A Camilli Nucleic acids research 37 (6), e46-e46, 2009 | 212 | 2009 |
Characterizing spontaneous induction of Stx encoding phages using a selectable reporter system J Livny, DI Friedman Molecular microbiology 51 (6), 1691-1704, 2004 | 165 | 2004 |
Bacterial virulence phenotypes of Escherichia coli and host susceptibility determine risk for urinary tract infections HL Schreiber IV, MS Conover, WC Chou, ME Hibbing, AL Manson, ... Science translational medicine 9 (382), eaaf1283, 2017 | 152 | 2017 |
Multiple small RNAs identified in Mycobacterium bovis BCG are also expressed in Mycobacterium tuberculosis and Mycobacterium smegmatis JM DiChiara, LM Contreras-Martinez, J Livny, D Smith, KA McDonough, ... Nucleic acids research 38 (12), 4067-4078, 2010 | 150 | 2010 |
sRNAPredict: an integrative computational approach to identify sRNAs in bacterial genomes J Livny, MA Fogel, BM Davis, MK Waldor Nucleic acids research 33 (13), 4096-4105, 2005 | 136 | 2005 |
High-resolution definition of the Vibrio cholerae essential gene set with hidden Markov model–based analyses of transposon-insertion sequencing data MC Chao, JR Pritchard, YJ Zhang, EJ Rubin, J Livny, BM Davis, ... Nucleic acids research 41 (19), 9033-9048, 2013 | 134 | 2013 |
NanoRNAs prime transcription initiation in vivo SR Goldman, JS Sharp, IO Vvedenskaya, J Livny, SL Dove, BE Nickels Molecular cell 42 (6), 817-825, 2011 | 128 | 2011 |