The Medicago genome provides insight into the evolution of rhizobial symbioses ND Young, F Debellé, GED Oldroyd, R Geurts, SB Cannon, MK Udvardi, ... nature 480 (7378), 520-524, 2011 | 1362 | 2011 |
Araport11: a complete reannotation of the Arabidopsis thaliana reference genome CY Cheng, V Krishnakumar, AP Chan, F Thibaud‐Nissen, S Schobel, ... The Plant Journal 89 (4), 789-804, 2017 | 996 | 2017 |
Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea IAP Parkin, C Koh, H Tang, SJ Robinson, S Kagale, WE Clarke, CD Town, ... Genome biology 15, 1-18, 2014 | 500 | 2014 |
An improved genome release (version Mt4. 0) for the model legume Medicago truncatula H Tang, V Krishnakumar, S Bidwell, B Rosen, A Chan, S Zhou, ... BMC genomics 15, 1-14, 2014 | 462 | 2014 |
ePlant: visualizing and exploring multiple levels of data for hypothesis generation in plant biology J Waese, J Fan, A Pasha, H Yu, G Fucile, R Shi, M Cumming, LA Kelley, ... The Plant Cell 29 (8), 1806-1821, 2017 | 353 | 2017 |
Araport: the Arabidopsis information portal V Krishnakumar, MR Hanlon, S Contrino, ES Ferlanti, S Karamycheva, ... Nucleic acids research 43 (D1), D1003-D1009, 2015 | 232 | 2015 |
Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome EP Hamilton, A Kapusta, PE Huvos, SL Bidwell, N Zafar, H Tang, ... elife 5, e19090, 2016 | 144 | 2016 |
MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes S Chamala, N García, GT Godden, V Krishnakumar, IE Jordon‐Thaden, ... Applications in plant sciences 3 (4), 1400115, 2015 | 120 | 2015 |
jcvi: JCVI utility libraries H Tang, V Krishnakumar, J Li, X Zhang Zenodo 30, 2015, 2015 | 76 | 2015 |
MTGD: The Medicago truncatula Genome Database V Krishnakumar, M Kim, BD Rosen, S Karamycheva, SL Bidwell, H Tang, ... Plant and Cell Physiology 56 (1), e1-e1, 2015 | 76 | 2015 |
ThaleMine: a warehouse for Arabidopsis data integration and discovery V Krishnakumar, S Contrino, CY Cheng, I Belyaeva, ES Ferlanti, JR Miller, ... Plant and Cell Physiology 58 (1), e4-e4, 2017 | 51 | 2017 |
An ‘eFP‐Seq Browser’for visualizing and exploring RNA sequencing data A Sullivan, PK Purohit, NH Freese, A Pasha, E Esteban, J Waese, A Wu, ... The Plant Journal 100 (3), 641-654, 2019 | 46 | 2019 |
Hidden genomic evolution in a morphospecies—the landscape of rapidly evolving genes in Tetrahymena J Xiong, W Yang, K Chen, C Jiang, Y Ma, X Chai, G Yan, G Wang, D Yuan, ... PLoS biology 17 (6), e3000294, 2019 | 36 | 2019 |
A maize database resource that captures tissue-specific and subcellular-localized gene expression, via fluorescent tags and confocal imaging (Maize Cell Genomics Database) V Krishnakumar, Y Choi, E Beck, Q Wu, A Luo, A Sylvester, D Jackson, ... Plant and Cell Physiology 56 (1), e12-e12, 2015 | 31 | 2015 |
Polyribosomal RNA-Seq reveals the decreased complexity and diversity of the Arabidopsis translatome X Zhang, BD Rosen, H Tang, V Krishnakumar, CD Town PLoS One 10 (2), e0117699, 2015 | 23 | 2015 |
Araport: an application platform for data discovery MR Hanlon, M Vaughn, S Mock, R Dooley, W Moreira, J Stubbs, C Town, ... Concurrency and Computation: Practice and Experience 27 (16), 4412-4422, 2015 | 10 | 2015 |
A web-based software system for dynamic gene cluster comparison across multiple genomes KV Revanna, V Krishnakumar, Q Dong Bioinformatics 25 (7), 956-957, 2009 | 8 | 2009 |
The arabidopsis information portal: an application platform for data discovery MR Hanlon, M Vaughn, S Mock, R Dooley, W Moreira, J Stubbs, C Town, ... 2014 9th Gateway Computing Environments Workshop, 38-41, 2014 | 3 | 2014 |
JCVI: A versatile toolkit for comparative genomics analysis H Tang, V Krishnakumar, X Zeng, Z Xu, A Taranto, JS Lomas, Y Zhang, ... iMeta, e211, 2024 | | 2024 |
Polyribosomal RNA-Seq reveals the decreased complexity and diversity of the Arabidopsis translatome. ZXT Zhang XingTan, BD Rosen, THB Tang HaiBao, V Krishnakumar, ... | | 2015 |