Overview of the protein-protein interaction annotation extraction task of BioCreative II M Krallinger, F Leitner, C Rodriguez-Penagos, A Valencia Genome biology 9, 1-19, 2008 | 349 | 2008 |
The CHEMDNER corpus of chemicals and drugs and its annotation principles M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ... Journal of cheminformatics 7, 1-17, 2015 | 341 | 2015 |
Information retrieval and text mining technologies for chemistry M Krallinger, O Rabal, A Lourenco, J Oyarzabal, A Valencia Chemical reviews 117 (12), 7673-7761, 2017 | 280 | 2017 |
Linking genes to literature: text mining, information extraction, and retrieval applications for biology M Krallinger, A Valencia, L Hirschman Genome biology 9, 1-14, 2008 | 279 | 2008 |
Overview of the BioCreative VI chemical-protein interaction Track M Krallinger, O Rabal, SA Akhondi, M Pérez Pérez, J Santamaría, ... Proceedings of the sixth BioCreative challenge evaluation workshop 1, 141-146, 2017 | 266 | 2017 |
Text-mining and information-retrieval services for molecular biology M Krallinger, A Valencia Genome biology 6, 1-8, 2005 | 260 | 2005 |
CHEMDNER: The drugs and chemical names extraction challenge M Krallinger, F Leitner, O Rabal, M Vazquez, J Oyarzabal, A Valencia Journal of cheminformatics 7, 1-11, 2015 | 253 | 2015 |
Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge M Krallinger, A Morgan, L Smith, F Leitner, L Tanabe, J Wilbur, ... Genome biology 9, 1-9, 2008 | 228 | 2008 |
Text-mining approaches in molecular biology and biomedicine M Krallinger, RAA Erhardt, A Valencia Drug discovery today 10 (6), 439-445, 2005 | 218 | 2005 |
BioC: a minimalist approach to interoperability for biomedical text processing DC Comeau, R Islamaj Doğan, P Ciccarese, KB Cohen, M Krallinger, ... Database 2013, 2013 | 204 | 2013 |
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text M Krallinger, M Vazquez, F Leitner, D Salgado, A Chatr-Aryamontri, ... BMC bioinformatics 12, 1-31, 2011 | 193 | 2011 |
Text mining for the biocuration workflow L Hirschman, GAP Burns, M Krallinger, C Arighi, KB Cohen, A Valencia, ... Database 2012, 2012 | 184 | 2012 |
Evaluation of BioCreAtIvE assessment of task 2 C Blaschke, EA Leon, M Krallinger, A Valencia BMC bioinformatics 6, 1-13, 2005 | 184 | 2005 |
An overview of BioCreative II. 5 F Leitner, SA Mardis, M Krallinger, G Cesareni, LA Hirschman, A Valencia IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (3), 385-399, 2010 | 143 | 2010 |
Overview of the BioCreative III workshop CN Arighi, Z Lu, M Krallinger, KB Cohen, WJ Wilbur, A Valencia, ... BMC bioinformatics 12, 1-9, 2011 | 131 | 2011 |
Text mining for biology-the way forward: opinions from leading scientists RB Altman, CM Bergman, J Blake, C Blaschke, A Cohen, F Gannon, ... Genome biology 9, 1-15, 2008 | 130 | 2008 |
Text mining for metabolic pathways, signaling cascades, and protein networks R Hoffmann, M Krallinger, E Andres, J Tamames, C Blaschke, A Valencia Science's STKE 2005 (283), pe21-pe21, 2005 | 120 | 2005 |
Analysis of biological processes and diseases using text mining approaches M Krallinger, F Leitner, A Valencia Bioinformatics Methods in Clinical Research, 341-382, 2010 | 113 | 2010 |
Named Entity Recognition, Concept Normalization and Clinical Coding: Overview of the Cantemist Track for Cancer Text Mining in Spanish, Corpus, Guidelines, Methods and Results. A Miranda-Escalada, E Farré, M Krallinger IberLEF@ SEPLN, 303-323, 2020 | 107 | 2020 |
Pharmaconer: Pharmacological substances, compounds and proteins named entity recognition track A Gonzalez-Agirre, M Marimon, A Intxaurrondo, O Rabal, M Villegas, ... Proceedings of The 5th Workshop on BioNLP Open Shared Tasks, 1-10, 2019 | 105 | 2019 |