| Phage family classification under Caudoviricetes: A review of current tools using the latest ICTV classification framework Y Zhu, J Shang, C Peng, Y Sun Frontiers in Microbiology 13, 1032186, 2022 | 60 | 2022 |
| PhaBOX: a web server for identifying and characterizing phage contigs in metagenomic data J Shang, C Peng, H Liao, X Tang, Y Sun Bioinformatics Advances 3 (1), vbad101, 2023 | 24 | 2023 |
| PhaVIP: Phage VIrion Protein classification based on chaos game representation and Vision Transformer J Shang, C Peng, X Tang, Y Sun Bioinformatics 39 (Supplement_1), i30-i39, 2023 | 6 | 2023 |
| PhaGenus: genus-level classification of bacteriophages using a Transformer model J Guan, C Peng, J Shang, X Tang, Y Sun Briefings in Bioinformatics 24 (6), bbad408, 2023 | 2 | 2023 |
| ViraLM: Empowering Virus Discovery through the Genome Foundation Model C Peng, J Shang, J Guan, D Wang, Y Sun bioRxiv, 2024.01. 30.577935, 2024 | 1 | 2024 |
| Accurate and efficient protein embedding using multi-teacher distillation learning J Shang, C Peng, Y Ji, J Guan, D Cai, X Tang, Y Sun arXiv preprint arXiv:2405.11735, 2024 | | 2024 |
