Thomas A. Hopf 个人学术档案

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Debora MarksSystems Biology, Harvard Medical School, Broad Institute of Harvard and MIT在 hms.harvard.edu 的电子邮件经过验证
Chris SanderHarvard Medical School, Broad Institute, Dana-Farber Cancer Institute, Memorial Sloan Kettering在 sanderlab.org 的电子邮件经过验证
Charlotta ScharfePrincipal Data Scientist, F. Hoffmann-La Roche, Switzerland在 roche.com 的电子邮件经过验证
John IngrahamGenerate Biomedicines, Inc在 csail.mit.edu 的电子邮件经过验证
Anna G. GreenAssistant Professor, Manning College of Information and Computer Sciences, UMass, Amherst在 umass.edu 的电子邮件经过验证
Burkhard RostProfessor of Computer Science & Computational Biology & Bioinformatics, TUM, Munich在 tum.de 的电子邮件经过验证
Andrea PagnaniProfessor at DISAT - Politecnico di Torino, and PI at the IIGM在 polito.it 的电子邮件经过验证
Riccardo Zecchinaprofessor, theoretical physics, Bocconi University在 unibocconi.it 的电子邮件经过验证
Frank PoelwijkGenerate Biomedicines LLC在 generatebiomedicines.com 的电子邮件经过验证
Michael Springerharvard medical school在 hms.harvard.edu 的电子邮件经过验证
Oliver KohlbacherProfessor for Applied Bioinformatics, University of Tübingen在 uni-tuebingen.de 的电子邮件经过验证
Benjamin SchubertGroup Leader, ICB@Helmholtz Center Munich在 helmholtz-muenchen.de 的电子邮件经过验证
Agnes Toth-PetroczyMPI of Molecular Cell Biology and Genetics and Center for Systems Biology Dresden在 mpi-cbg.de 的电子邮件经过验证
Matúš KalašSenior Engineer / Infrastructure Scientist, Department of Informatics, University of Bergen在 uib.no 的电子邮件经过验证
Richard BentonUniversity of Lausanne在 unil.ch 的电子邮件经过验证
Gaetano T Montelione, Constellation...Rensselaer Polytechnic Institute在 rpi.edu 的电子邮件经过验证
Maximilian HechtAmazon.com Inc.在 rostlab.org 的电子邮件经过验证
Peter HönigschmidDepartment of Genome-Oriented Bioinformatics, TUM, Weihenstephan在 wzw.tum.de 的电子邮件经过验证
Stefan SeemayerComputational Biologist at BASF SE在 seemayer.de 的电子邮件经过验证
Denis KrompassSiemens AG在 siemens.com 的电子邮件经过验证

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Thomas A. Hopf

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在 thomashopf.com 的电子邮件经过验证

Computational Biology


标题按引用次数排序按年份排序按标题排序	引用次数引用次数	年份
Protein 3D structure computed from evolutionary sequence variation DS Marks, LJ Colwell, R Sheridan, TA Hopf, A Pagnani, R Zecchina, ... PloS one 6 (12), e28766, 2011	1248	2011
A large-scale evaluation of computational protein function prediction P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ... Nature methods 10 (3), 221-227, 2013	1081	2013
Protein structure prediction from sequence variation DS Marks, TA Hopf, C Sander Nature biotechnology 30 (11), 1072-1080, 2012	705	2012
Mutation effects predicted from sequence co-variation TA Hopf, JB Ingraham, FJ Poelwijk, CPI Schärfe, M Springer, C Sander, ... Nature biotechnology 35 (2), 128-135, 2017	642	2017
A deep proteome and transcriptome abundance atlas of 29 healthy human tissues D Wang, B Eraslan, T Wieland, B Hallström, T Hopf, DP Zolg, J Zecha, ... Molecular systems biology 15 (2), e8503, 2019	633	2019
Three-dimensional structures of membrane proteins from genomic sequencing TA Hopf, LJ Colwell, R Sheridan, B Rost, C Sander, DS Marks Cell 149 (7), 1607-1621, 2012	594	2012
Sequence co-evolution gives 3D contacts and structures of protein complexes TA Hopf, CPI Schärfe, JP Rodrigues, AG Green, O Kohlbacher, C Sander, ... elife 3, e03430, 2014	533	2014
A systematic p53 mutation library links differential functional impact to cancer mutation pattern and evolutionary conservation E Kotler, O Shani, G Goldfeld, M Lotan-Pompan, O Tarcic, A Gershoni, ... Molecular cell 71 (1), 178-190. e8, 2018	264	2018
The EVcouplings Python framework for coevolutionary sequence analysis TA Hopf, AG Green, B Schubert, S Mersmann, CPI Schärfe, JB Ingraham, ... Bioinformatics 35 (9), 1582-1584, 2019	221	2019
FreeContact: fast and free software for protein contact prediction from residue co-evolution L Kaján, TA Hopf, M Kalaš, DS Marks, B Rost BMC bioinformatics 15, 1-6, 2014	193	2014
Meltome atlas—thermal proteome stability across the tree of life A Jarzab, N Kurzawa, T Hopf, M Moerch, J Zecha, N Leijten, Y Bian, ... Nature methods 17 (5), 495-503, 2020	190	2020
Structured states of disordered proteins from genomic sequences A Toth-Petroczy, P Palmedo, J Ingraham, TA Hopf, B Berger, C Sander, ... Cell 167 (1), 158-170. e12, 2016	151	2016
Amino acid coevolution reveals three-dimensional structure and functional domains of insect odorant receptors TA Hopf, S Morinaga, S Ihara, K Touhara, DS Marks, R Benton Nature communications 6 (1), 6077, 2015	145	2015
Structure of the peptidoglycan polymerase RodA resolved by evolutionary coupling analysis M Sjodt, K Brock, G Dobihal, PDA Rohs, AG Green, TA Hopf, AJ Meeske, ... Nature 556 (7699), 118-121, 2018	133	2018
Protein structure determination by combining sparse NMR data with evolutionary couplings Y Tang, YJ Huang, TA Hopf, C Sander, DS Marks, GT Montelione Nature methods 12 (8), 751-754, 2015	86	2015
Quantification and discovery of sequence determinants of protein‐per‐mRNA amount in 29 human tissues B Eraslan, D Wang, M Gusic, H Prokisch, BM Hallström, M Uhlén, ... Molecular systems biology 15 (2), e8513, 2019	75	2019
Homology-based inference sets the bar high for protein function prediction T Hamp, R Kassner, S Seemayer, E Vicedo, C Schaefer, D Achten, F Auer, ... BMC bioinformatics 14, 1-10, 2013	61	2013
Quantification of the effect of mutations using a global probability model of natural sequence variation TA Hopf, JB Ingraham, FJ Poelwijk, M Springer, C Sander, DS Marks arXiv preprint arXiv:1510.04612, 2015	39	2015
Decrypting drug actions and protein modifications by dose-and time-resolved proteomics J Zecha, FP Bayer, S Wiechmann, J Woortman, N Berner, J Müller, ... Science 380 (6640), 93-101, 2023	38	2023
PDBe-KB: collaboratively defining the biological context of structural data Nucleic acids research 50 (D1), D534-D542, 2022	36	2022

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