The RAST Server: rapid annotations using subsystems technology R Aziz, D Bartels, A Best, M DeJongh, T Disz, R Edwards, K Formsma, ... BMC genomics 9 (1), 75, 2008 | 11889 | 2008 |
Quality control and preprocessing of metagenomic datasets R Schmieder, R Edwards Bioinformatics 27 (6), 863, 2011 | 5024 | 2011 |
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) R Overbeek, R Olson, GD Pusch, GJ Olsen, JJ Davis, T Disz, RA Edwards, ... Nucleic acids research 42 (D1), D206-D214, 2014 | 4479 | 2014 |
The metagenomics RAST server–a public resource for the automatic phylogenetic and functional analysis of metagenomes F Meyer, D Paarmann, M D'Souza, R Olson, EM Glass, M Kubal, ... BMC bioinformatics 9 (1), 386, 2008 | 4023 | 2008 |
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes T Brettin, JJ Davis, T Disz, RA Edwards, S Gerdes, GJ Olsen, R Olson, ... Scientific reports 5 (1), 1-6, 2015 | 2420 | 2015 |
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes R Overbeek, T Begley, RM Butler, JV Choudhuri, HY Chuang, M Cohoon, ... Nucleic acids research 33 (17), 5691-5702, 2005 | 2301 | 2005 |
Community genomics among stratified microbial assemblages in the ocean's interior EF DeLong, CM Preston, T Mincer, V Rich, SJ Hallam, NU Frigaard, ... Science 311 (5760), 496-503, 2006 | 1531 | 2006 |
The minimum information about a genome sequence (MIGS) specification D Field, G Garrity, T Gray, N Morrison, J Selengut, P Sterk, T Tatusova, ... Nature biotechnology 26 (5), 541-547, 2008 | 1362 | 2008 |
The marine viromes of four oceanic regions FE Angly, B Felts, M Breitbart, P Salamon, RA Edwards, C Carlson, ... PLoS biology 4 (11), e368, 2006 | 1132 | 2006 |
Viral metagenomics RA Edwards, F Rohwer Nature Reviews Microbiology 3 (6), 504-510, 2005 | 1123 | 2005 |
Functional metagenomic profiling of nine biomes EA Dinsdale, RA Edwards, D Hall, F Angly, M Breitbart, JM Brulc, ... Nature 452 (7187), 629-632, 2008 | 1121 | 2008 |
Nitrogen control in bacteria MJ Merrick, RA Edwards Microbiological reviews 59 (4), 604-622, 1995 | 921 | 1995 |
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases JM Brulc, DA Antonopoulos, ME Berg Miller, MK Wilson, AC Yannarell, ... Proceedings of the National Academy of Sciences 106 (6), 1948-1953, 2009 | 854 | 2009 |
The Phage Proteomic Tree: a genome-based taxonomy for phage F Rohwer, R Edwards Journal of bacteriology 184 (16), 4529-4535, 2002 | 850 | 2002 |
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes BE Dutilh, N Cassman, K McNair, SE Sanchez, GGZ Silva, L Boling, ... Nature communications 5 (1), 4498, 2014 | 808 | 2014 |
Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets R Schmieder, R Edwards PLoS One 6 (3), e17288, 2011 | 778 | 2011 |
Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 753 | 2017 |
Metagenomic analysis of stressed coral holobionts RV Thurber, D Willner‐Hall, B Rodriguez‐Mueller, C Desnues, ... Environmental microbiology 11 (8), 2148-2163, 2009 | 707 | 2009 |
Metagenomic analysis of the microbial community associated with the coral Porites astreoides L Wegley, R Edwards, B Rodriguez‐Brito, H Liu, F Rohwer Environmental microbiology 9 (11), 2707-2719, 2007 | 664 | 2007 |
Improved allelic exchange vectors and their use to analyze 987P fimbria gene expression RA Edwards, LH Keller, DM Schifferli Gene 207 (2), 149-157, 1998 | 658 | 1998 |