Improving physical realism, stereochemistry, and side‐chain accuracy in homology modeling: Four approaches that performed well in CASP8 E Krieger, K Joo, J Lee, J Lee, S Raman, J Thompson, M Tyka, D Baker, ... Proteins: Structure, Function, and Bioinformatics 77 (S9), 114-122, 2009 | 1436 | 2009 |
Assessment of network module identification across complex diseases S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ... Nature methods 16 (9), 843-852, 2019 | 247 | 2019 |
CHARMM-GUI Glycan Modeler for modeling and simulation of carbohydrates and glycoconjugates SJ Park, J Lee, Y Qi, NR Kern, HS Lee, S Jo, IS Joung, K Joo, J Lee, W Im Glycobiology 29 (4), 320-331, 2019 | 247 | 2019 |
Structural studies of a bacterial condensin complex reveal ATP-dependent disruption of intersubunit interactions JS Woo, JH Lim, HC Shin, MK Suh, B Ku, KH Lee, K Joo, H Robinson, ... Cell 136 (1), 85-96, 2009 | 170 | 2009 |
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 166 | 2016 |
Prediction of protein tertiary structure using PROFESY, a novel method based on fragment assembly and conformational space annealing J Lee, SY Kim, K Joo, I Kim, J Lee Proteins: Structure, Function, and Bioinformatics 56 (4), 704-714, 2004 | 111 | 2004 |
Sann: solvent accessibility prediction of proteins by nearest neighbor method K Joo, SJ Lee, J Lee Proteins: Structure, Function, and Bioinformatics 80 (7), 1791-1797, 2012 | 86 | 2012 |
High accuracy template based modeling by global optimization K Joo, J Lee, S Lee, JH Seo, SJ Lee, J Lee Proteins: Structure, Function, and Bioinformatics 69 (S8), 83-89, 2007 | 80 | 2007 |
Necessary and sufficient conditions for the asymmetric synthesis of chiral amines using ω‐aminotransferases JH Seo, D Kyung, K Joo, J Lee, BG Kim Biotechnology and bioengineering 108 (2), 253-263, 2011 | 68 | 2011 |
Architecture of the type IV coupling protein complex of Legionella pneumophila MJ Kwak, JD Kim, H Kim, C Kim, JW Bowman, S Kim, K Joo, J Lee, KS Jin, ... Nature microbiology 2 (9), 1-13, 2017 | 64 | 2017 |
All‐atom chain‐building by optimizing MODELLER energy function using conformational space annealing K Joo, J Lee, JH Seo, K Lee, BG Kim, J Lee Proteins: Structure, Function, and Bioinformatics 75 (4), 1010-1023, 2009 | 59 | 2009 |
Assessment of predictions submitted for the CASP7 domain prediction category M Tress, J Cheng, P Baldi, K Joo, J Lee, JH Seo, J Lee, D Baker, ... Proteins: Structure, Function, and Bioinformatics 69 (S8), 137-151, 2007 | 58 | 2007 |
Multiple sequence alignment by conformational space annealing K Joo, J Lee, I Kim, SJ Lee, J Lee Biophysical journal 95 (10), 4813-4819, 2008 | 50 | 2008 |
Heterozygous mutations in cyclic AMP phosphodiesterase-4D (PDE4D) and protein kinase A (PKA) provide new insights into the molecular pathology of acrodysostosis T Kaname, CS Ki, N Niikawa, GS Baillie, JP Day, K Yamamura, T Ohta, ... Cellular signalling 26 (11), 2446-2459, 2014 | 48 | 2014 |
Protein structure modeling for CASP10 by multiple layers of global optimization K Joo, J Lee, S Sim, SY Lee, K Lee, S Heo, IH Lee, SJ Lee, J Lee Proteins: Structure, Function, and Bioinformatics 82, 188-195, 2014 | 42 | 2014 |
Small heat shock protein IbpB acts as a robust chaperone in living cells by hierarchically activating its multi-type substrate-binding residues X Fu, X Shi, L Yin, J Liu, K Joo, J Lee, Z Chang Journal of Biological Chemistry 288 (17), 11897-11906, 2013 | 41 | 2013 |
Structural basis of intersubunit recognition in elongin BC–cullin 5–SOCS box ubiquitin–protein ligase complexes YK Kim, MJ Kwak, B Ku, HY Suh, K Joo, J Lee, JU Jung, BH Oh Acta Crystallographica Section D: Biological Crystallography 69 (8), 1587-1597, 2013 | 39 | 2013 |
Template based protein structure modeling by global optimization in CASP 11 K Joo, IS Joung, SY Lee, JY Kim, Q Cheng, B Manavalan, JY Joung, ... Proteins: Structure, Function, and Bioinformatics 84, 221-232, 2016 | 38 | 2016 |
Refinement of protein termini in template‐based modeling using conformational space annealing H Park, J Ko, K Joo, J Lee, C Seok, J Lee Proteins: Structure, Function, and Bioinformatics 79 (9), 2725-2734, 2011 | 37 | 2011 |
Protein‐binding site prediction based on three‐dimensional protein modeling M Oh, K Joo, J Lee Proteins: Structure, Function, and Bioinformatics 77 (S9), 152-156, 2009 | 35 | 2009 |