iRegulon: from a gene list to a gene regulatory network using large motif and track collections R Janky, A Verfaillie, H Imrichová, B Van de Sande, L Standaert, ... PLoS computational biology 10 (7), e1003731, 2014 | 814 | 2014 |
Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state A Verfaillie, H Imrichova, ZK Atak, M Dewaele, F Rambow, G Hulselmans, ... Nature communications 6 (1), 6683, 2015 | 417 | 2015 |
Coupled scRNA-seq and intracellular protein activity reveal an immunosuppressive role of TREM2 in cancer Y Katzenelenbogen, F Sheban, A Yalin, I Yofe, D Svetlichnyy, DA Jaitin, ... Cell 182 (4), 872-885. e19, 2020 | 350 | 2020 |
Multiplex enhancer-reporter assays uncover unsophisticated TP53 enhancer logic A Verfaillie, D Svetlichnyy, H Imrichova, K Davie, M Fiers, ZK Atak, ... Genome research 26 (7), 882-895, 2016 | 82 | 2016 |
Identification of High-Impact cis-Regulatory Mutations Using Transcription Factor Specific Random Forest Models D Svetlichnyy, H Imrichova, M Fiers, Z Kalender Atak, S Aerts PLoS computational biology 11 (11), e1004590, 2015 | 28 | 2015 |
Systems pharmacology models can be used to understand complex pharmacokinetic‐pharmacodynamic behavior: an example using 5‐lipoxygenase inhibitors O Demin, T Karelina, D Svetlichniy, E Metelkin, G Speshilov, O Demin Jr, ... CPT: Pharmacometrics & Systems Pharmacology 2 (9), 1-9, 2013 | 26 | 2013 |
Identification of cis-regulatory mutations generating de novo edges in personalized cancer gene regulatory networks Z Kalender Atak, H Imrichova, D Svetlichnyy, G Hulselmans, V Christiaens, ... Genome Medicine 9, 1-13, 2017 | 16 | 2017 |
ACE-inhibition induces a cardioprotective transcriptional response in the metabolic syndrome heart PCPH Aziza Yakubova, Lieven Thorrez, Dmitry Svetlichnyy, Liesbeth Zwarts ... Scientific reports, 2018 | 10 | 2018 |
Regulation of leukotriene and 5oxoETE synthesis and the effect of 5-lipoxygenase inhibitors: a mathematical modeling approach TA Karelina, KV Zhudenkov, OO Demin, DV Svetlichny, B Agoram, ... BMC systems biology 6, 1-14, 2012 | 10 | 2012 |
Single-Cell Gene Expression Analysis Revealed Immune Cell Signatures of Delta COVID-19 AM Shaymardanov, OA Antonova, AD Sokol, KA Deinichenko, ... Cells 11 (19), 2950, 2022 | 2 | 2022 |
Diminished preconditioning potential in the hearts from metabolic syndrome subjects can be partially restored by angiotensin-converting-enzyme inhibitor therapy A Yakubova, L Thorrez, D Svetlichnyy, G Van Der Mieren, W Oosterlinck, ... European Heart Journal 39, 1363-1363, 2018 | | 2018 |
P6446 Diminished preconditioning potential in the hearts from metabolic syndrome subjects can be partially restored by angiotensin-converting-enzyme inhibitor therapy A Yakubova, L Thorrez, D Svetlichnyy, G Van Der Mieren, W Oosterlinck, ... European Heart Journal 39 (suppl_1), ehy566. P6446, 2018 | | 2018 |
Approaches to building spatio-temporal models of splicing regulation that include RNA structure D Svetlichnyy, D Pervouchine Moscow Conference on Computational Molecular Biology (MCCMB 2017), 72-72, 2017 | | 2017 |
IDENTIFICATION OF CIS-REGULATORY MODULES AND NON-CODING VARIATION USING MACHINE LEARNING METHODS D Svetlichnyy | | 2016 |
Directly linking non-coding SNPs to changes in epithelial enhancer activity J Jacobs, I Taskiran, G Paciello EMBL Transcription and Chromatin Proceedings, 2016 | | 2016 |
ESTIMATING THE IMPACT OF CIS-REGULATORY VARIATION IN CANCER GENOMES USING ENHANCER PREDICTION MODELS AND MATCHED GENOME-EPIGENOME-TRANSCRIPTOME DATA D Svetlichnyy, I Hana, KA Zeynep, S Aerts 10th Benelux Bioinformatics Conference, Location: Antwerp, Belgium, 2015 | | 2015 |
A novel High-throughput Enhancer reporter assay reveals unsophisticated p53 enhancer logic A Verfaillie, K Davie, D Svetlichnyy, M Fiers, S Aerts Functional Genomics and Systems Biology, Date: 2015/10/28-2015/10/30 …, 2015 | | 2015 |
Estimating the impact of cis-regulatory variation in cancer genomes using enhancer prediction models and matched genome-epigenome-transcriptome data H Imrichova, Z Kalender Atak, D Svetlichnyy, J Reumers, H Ceulemans, ... Functional Genomics and Systems Biology: From Model Organisms to Human …, 2015 | | 2015 |
Melanoma transcriptome and chromatin profiling identifies a proliferative SOX10/MITF gene network and an AP-1/TEADs invasive network H Imrichova, A Verfaillie, Z Kalender Atak, C Herrmann, G Hulselmans, ... EMBO Conference:, 2014 | | 2014 |
Prediction of transcriptional targets using advanced enhancer models D Svetlichnyy, H Imrichova, S Aerts BeNeLux Bioinformatics Conference, Date: 2013/12/09-2013/12/10, Location …, 2013 | | 2013 |