| BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs FA Simão, RM Waterhouse, P Ioannidis, EV Kriventseva, EM Zdobnov Bioinformatics 31 (19), 3210-3212, 2015 | 10404 | 2015 |
| BUSCO update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes M Manni, MR Berkeley, M Seppey, FA Simão, EM Zdobnov Molecular biology and evolution 38 (10), 4647-4654, 2021 | 2580 | 2021 |
| BUSCO applications from quality assessments to gene prediction and phylogenomics RM Waterhouse, M Seppey, FA Simão, M Manni, P Ioannidis, ... Molecular biology and evolution 35 (3), 543-548, 2018 | 1912 | 2018 |
| OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs EV Kriventseva, D Kuznetsov, F Tegenfeldt, M Manni, R Dias, FA Simão, ... Nucleic acids research 47 (D1), D807-D811, 2019 | 799 | 2019 |
| Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes DE Neafsey, RM Waterhouse, MR Abai, SS Aganezov, MA Alekseyev, ... Science 347 (6217), 1258522, 2015 | 593 | 2015 |
| OrthoDB v9. 1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs EM Zdobnov, F Tegenfeldt, D Kuznetsov, RM Waterhouse, FA Simão, ... Nucleic acids research 45 (D1), D744-D749, 2017 | 447 | 2017 |
| OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software EV Kriventseva, F Tegenfeldt, TJ Petty, RM Waterhouse, FA Simao, ... Nucleic acids research 43 (D1), D250-D256, 2015 | 296 | 2015 |
| Zdobnov EM. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs FA Simão, RM Waterhouse, P Ioannidis, EV Kriventseva Bioinformatics 31 (19), 3210-3212, 2015 | 168 | 2015 |
| Genome Sequencing of the Phytoseiid Predatory Mite Metaseiulus occidentalis Reveals Completely Atomized Hox Genes and … MA Hoy, RM Waterhouse, K Wu, AS Estep, P Ioannidis, WJ Palmer, ... Genome biology and evolution 8 (6), 1762-1775, 2016 | 119 | 2016 |
| Genome-enabled insights into the biology of thrips as crop pests D Rotenberg, AA Baumann, S Ben-Mahmoud, O Christiaens, W Dermauw, ... BMC biology 18, 1-37, 2020 | 76 | 2020 |
| Genomic Features of the Damselfly Calopteryx splendens Representing a Sister Clade to Most Insect Orders P Ioannidis, FA Simao, RM Waterhouse, M Manni, M Seppey, ... Genome biology and evolution 9 (2), 415-430, 2017 | 73 | 2017 |
| Using BUSCO to assess insect genomic resources RM Waterhouse, M Seppey, FA Simão, EM Zdobnov Insect Genomics: Methods and Protocols, 59-74, 2019 | 27 | 2019 |
| Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera JP Oeyen, P Baa-Puyoulet, JB Benoit, LW Beukeboom, E Bornberg-Bauer, ... Genome biology and evolution 12 (7), 1099-1188, 2020 | 21 | 2020 |
| Clinical categorization algorithm (CLICAL) and machine learning approach (SRF-CLICAL) to predict clinical benefit to immunotherapy in metastatic melanoma patients: real-world … G Madonna, GV Masucci, M Capone, D Mallardo, AM Grimaldi, ... Cancers 13 (16), 4164, 2021 | 8 | 2021 |
| The Genome of the Blind Soil-Dwelling and Ancestrally Wingless Dipluran Campodea augens: A Key Reference Hexapod for Studying the Emergence of Insect … M Manni, FA Simao, HM Robertson, MA Gabaglio, RM Waterhouse, ... Genome biology and evolution 12 (1), 3534-3549, 2020 | 5 | 2020 |
| SRF-CLICAL: An approach for patient risk stratification using random forest models FA Simao, R Hieta, JA Pulman, G Madonna, PA Ascierto, R Lewensohn, ... bioRxiv, 2021.06. 22.448514, 2021 | 2 | 2021 |
| BUSCO v3: Expanded Plant Coverage and Utilities Beyond Benchmarking. FA Simão, M Seppey, RM Waterhouse, M Manni, P Ioannidis, ... Plant and Animal Genome XXVI Conference (January 13-17, 2018), 2018 | | 2018 |
| SUPPLEMENTARY ONLINE MATERIAL FOR Y Xiao, N Suzuki, W He Acta Palaeontologica Polonica 62 (3), 647-656, 2017 | | 2017 |
| Utilities of OrthoDB and BUSCO FA Simão Plant and Animal Genome XXVI Conference (January 13-17, 2018), 0 | | |
| Sequencing of an Extremophilic Ice Crawler: Galloisiana yuasai FA Simão, R Machida, B Misof, O Niehuis, EM Zdobnov Plant and Animal Genome XXVI Conference (January 13-17, 2018), 0 | | |
