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Yongxin Ji
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PLASMe: a tool to identify PLASMid contigs from short-read assemblies using transformer
X Tang, J Shang, Y Ji, Y Sun
Nucleic Acids Research 51 (15), e83-e83, 2023
202023
High-resolution strain-level microbiome composition analysis from short reads
H Liao, Y Ji, Y Sun
Microbiome 11 (1), 183, 2023
122023
A blockchain-based vehicle platoon leader updating scheme
Y Ji, R Hou, KS Lui, H Li
ICC 2020-2020 IEEE International Conference on Communications (ICC), 1-6, 2020
102020
HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer
Y Ji, J Shang, X Tang, Y Sun
Bioinformatics 39 (5), btad283, 2023
92023
Accurate and efficient protein embedding using multi-teacher distillation learning
J Shang, C Peng, Y Ji, J Guan, D Cai, X Tang, Y Sun
Bioinformatics 40 (9), btae567, 2024
2024
PhaGO: Protein function annotation for bacteriophages by integrating the genomic context
J Guan, Y Ji, C Peng, W Zou, X Tang, J Shang, Y Sun
arXiv preprint arXiv:2408.06402, 2024
2024
MOSTPLAS: A Self-correction Multi-label Learning Model for Plasmid Host Range Prediction
W Zou, Y Ji, J Guan, Y Sun
bioRxiv, 2024.07. 31.606102, 2024
2024
PlasGO: enhancing GO-based function prediction for plasmid-encoded proteins based on genetic structure
Y Ji, J Shang, J Guan, W Zou, H Liao, X Tang, Y Sun
bioRxiv, 2024.07. 03.602011, 2024
2024
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