PLASMe: a tool to identify PLASMid contigs from short-read assemblies using transformer X Tang, J Shang, Y Ji, Y Sun Nucleic Acids Research 51 (15), e83-e83, 2023 | 20 | 2023 |
High-resolution strain-level microbiome composition analysis from short reads H Liao, Y Ji, Y Sun Microbiome 11 (1), 183, 2023 | 12 | 2023 |
A blockchain-based vehicle platoon leader updating scheme Y Ji, R Hou, KS Lui, H Li ICC 2020-2020 IEEE International Conference on Communications (ICC), 1-6, 2020 | 10 | 2020 |
HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer Y Ji, J Shang, X Tang, Y Sun Bioinformatics 39 (5), btad283, 2023 | 9 | 2023 |
Accurate and efficient protein embedding using multi-teacher distillation learning J Shang, C Peng, Y Ji, J Guan, D Cai, X Tang, Y Sun Bioinformatics 40 (9), btae567, 2024 | | 2024 |
PhaGO: Protein function annotation for bacteriophages by integrating the genomic context J Guan, Y Ji, C Peng, W Zou, X Tang, J Shang, Y Sun arXiv preprint arXiv:2408.06402, 2024 | | 2024 |
MOSTPLAS: A Self-correction Multi-label Learning Model for Plasmid Host Range Prediction W Zou, Y Ji, J Guan, Y Sun bioRxiv, 2024.07. 31.606102, 2024 | | 2024 |
PlasGO: enhancing GO-based function prediction for plasmid-encoded proteins based on genetic structure Y Ji, J Shang, J Guan, W Zou, H Liao, X Tang, Y Sun bioRxiv, 2024.07. 03.602011, 2024 | | 2024 |