Predicting essential genes based on network and sequence analysis YC Hwang, CC Lin, JY Chang, H Mori, HF Juan, HC Huang Molecular BioSystems 5 (12), 1672-1678, 2009 | 132 | 2009 |
Androgen pathway stimulates microRNA‐216a transcription to suppress the tumor suppressor in lung cancer‐1 gene in early hepatocarcinogenesis PJ Chen, SH Yeh, WH Liu, CC Lin, HC Huang, CL Chen, DS Chen, ... Hepatology 56 (2), 632-643, 2012 | 120 | 2012 |
Integrative network analysis reveals active microRNAs and their functions in gastric cancer CW Tseng, CC Lin, CN Chen, HC Huang, HF Juan BMC systems biology 5, 1-11, 2011 | 102 | 2011 |
A gene gravity model for the evolution of cancer genomes: a study of 3,000 cancer genomes across 9 cancer types F Cheng, C Liu, CC Lin, J Zhao, P Jia, WH Li, Z Zhao PLoS computational biology 11 (9), e1004497, 2015 | 84 | 2015 |
Studying tumorigenesis through network evolution and somatic mutational perturbations in the cancer interactome F Cheng, P Jia, Q Wang, CC Lin, WH Li, Z Zhao Molecular biology and evolution 31 (8), 2156-2169, 2014 | 81 | 2014 |
MicroRNA-regulated protein-protein interaction networks and their functions in breast cancer CH Lee, WH Kuo, CC Lin, YJ Oyang, HC Huang, HF Juan International journal of molecular sciences 14 (6), 11560-11606, 2013 | 74 | 2013 |
Co-expression analysis identifies long noncoding RNA SNHG1 as a novel predictor for event-free survival in neuroblastoma D Sahu, CL Hsu, CC Lin, TW Yang, WM Hsu, SY Ho, HF Juan, HC Huang Oncotarget 7 (36), 58022, 2016 | 72 | 2016 |
Crosstalk between transcription factors and microRNAs in human protein interaction network CC Lin, YJ Chen, CY Chen, YJ Oyang, HF Juan, HC Huang BMC systems biology 6, 1-13, 2012 | 59 | 2012 |
Identification of 14‐3‐3β in human gastric cancer cells and its potency as a diagnostic and prognostic biomarker CW Tseng, JC Yang, CN Chen, HC Huang, KN Chuang, CC Lin, HS Lai, ... Proteomics 11 (12), 2423-2439, 2011 | 59 | 2011 |
Dynamic functional modules in co-expressed protein interaction networks of dilated cardiomyopathy CC Lin, JT Hsiang, CY Wu, YJ Oyang, HF Juan, HC Huang BMC systems biology 4, 1-14, 2010 | 56 | 2010 |
Systematic dissection of dysregulated transcription factor–mirna feed-forward loops across tumor types W Jiang, R Mitra, CC Lin, Q Wang, F Cheng, Z Zhao Briefings in bioinformatics 17 (6), 996-1008, 2016 | 53 | 2016 |
Essential Core of Protein−Protein Interaction Network in Escherichia coli CC Lin, HF Juan, JT Hsiang, YC Hwang, H Mori, HC Huang Journal of proteome research 8 (4), 1925-1931, 2009 | 46 | 2009 |
Concordant dysregulation of miR-5p and miR-3p arms of the same precursor microRNA may be a mechanism in inducing cell proliferation and tumorigenesis: a lung cancer study R Mitra, CC Lin, CM Eischen, S Bandyopadhyay, Z Zhao Rna 21 (6), 1055-1065, 2015 | 44 | 2015 |
Functional consequences of somatic mutations in cancer using protein pocket-based prioritization approach H Vuong, F Cheng, CC Lin, Z Zhao Genome medicine 6, 1-14, 2014 | 38 | 2014 |
Profiling lipid–protein interactions using nonquenched fluorescent liposomal nanovesicles and proteome microarrays KY Lu, SC Tao, TC Yang, YH Ho, CH Lee, CC Lin, HF Juan, HC Huang, ... Molecular & Cellular Proteomics 11 (11), 1177-1190, 2012 | 38 | 2012 |
Differential microRNA regulation correlates with alternative polyadenylation pattern between breast cancer and normal cells HH Liaw, CC Lin, HF Juan, HC Huang PLoS One 8 (2), e56958, 2013 | 36 | 2013 |
Regulation rewiring analysis reveals mutual regulation between STAT1 and miR-155-5p in tumor immunosurveillance in seven major cancers CC Lin, W Jiang, R Mitra, F Cheng, H Yu, Z Zhao Scientific reports 5 (1), 12063, 2015 | 26 | 2015 |
Dynamic protein interaction modules in human hepatocellular carcinoma progression H Yu, CC Lin, YY Li, Z Zhao BMC systems biology 7, 1-13, 2013 | 26 | 2013 |
Functional evolution of cardiac microRNAs in heart development and functions CC Lin, YM Chang, CT Pan, CC Chen, L Ling, KC Tsao, RB Yang, WH Li Molecular biology and evolution 31 (10), 2722-2734, 2014 | 22 | 2014 |
Reduced lipolysis in lipoma phenocopies lipid accumulation in obesity D Le Duc, CC Lin, Y Popkova, Z Yang, V Akhil, MV Çakir, S Grunewald, ... International journal of obesity 45 (3), 565-576, 2021 | 18 | 2021 |