A global metagenomic map of urban microbiomes and antimicrobial resistance D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ... Cell 184 (13), 3376-3393. e17, 2021 | 259* | 2021 |
Reconstruction of microbial haplotypes by integration of statistical and physical linkage in scaffolding C Cao, J He, L Mak, D Perera, D Kwok, J Wang, M Li, T Mourier, ... Molecular Biology and Evolution, 2021 | 13 | 2021 |
Evaluation of a phylogenetic pipeline to examine transmission networks in a Canadian HIV Cohort L Mak, D Perera, R Lang, P Kossinna, J He, MJ Gill, Q Long, G van Marle Microorganisms 8 (2), 196, 2020 | 9 | 2020 |
PRESM: personalized reference editor for somatic mutation discovery in cancer genomics C Cao, L Mak, G Jin, P Gordon, K Ye, Q Long Bioinformatics 35 (9), 1445-1452, 2019 | 6 | 2019 |
Ariadne: synthetic long read deconvolution using assembly graphs L Mak, D Meleshko, DC Danko, WN Barakzai, S Maharjan, N Belchikov, ... Genome Biology 24 (1), 197, 2023 | 3 | 2023 |
Ariadne: Barcoded linked-read deconvolution using de bruijn graphs L Mak, D Meleshko, DC Danko, WN Barakzai, N Belchikov, I Hajirasouliha BioRxiv, 2021.05. 09.443255, 2021 | 2 | 2021 |
De novo reconstruction of microbial haplotypes by integrating statistical and physical linkage C Cao, J He, L Mak, D Perera, D Kwok, J Wang, M Li, T Mourier, ... Cold Spring Harbor Laboratory, 2020 | 1 | 2020 |
A modular metagenomics analysis system for integrated multi-step data exploration L Mak, B Tierney, C Ronkowski, M Toomey, JSA Martinez, S Zimmerman, ... bioRxiv, 2023 | | 2023 |
Resolving Complex Microbial Populations and Transmission Networks Through Haplotype Reconstruction L Mak | | 2019 |
SimPEL: Simulation‐based power estimation for sequencing studies of low‐prevalence conditions L Mak, M Li, C Cao, P Gordon, M Tarailo‐Graovac, C Bousman, P Wang, ... Genetic epidemiology 42 (5), 480-487, 2018 | | 2018 |