| A large-scale evaluation of computational protein function prediction P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ... Nature methods 10 (3), 221-227, 2013 | 1056 | 2013 |
| An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17, 1-19, 2016 | 414 | 2016 |
| Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters C Funk, W Baumgartner, B Garcia, C Roeder, M Bada, KB Cohen, ... BMC bioinformatics 15, 1-29, 2014 | 131 | 2014 |
| A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools K Verspoor, KB Cohen, A Lanfranchi, C Warner, HL Johnson, C Roeder, ... BMC bioinformatics 13, 1-26, 2012 | 127 | 2012 |
| Combining heterogeneous data sources for accurate functional annotation of proteins A Sokolov, C Funk, K Graim, K Verspoor, A Ben-Hur BMC bioinformatics 14, 1-13, 2013 | 68 | 2013 |
| The colorado richly annotated full text (craft) corpus: Multi-model annotation in the biomedical domain KB Cohen, K Verspoor, K Fort, C Funk, M Bada, M Palmer, LE Hunter Handbook of Linguistic annotation, 1379-1394, 2017 | 54 | 2017 |
| PHENOstruct: prediction of human phenotype ontology terms using heterogeneous data sources I Kahanda, C Funk, K Verspoor, A Ben-Hur F1000Research 4, 2015 | 37 | 2015 |
| Evaluating a variety of text-mined features for automatic protein function prediction with GOstruct CS Funk, I Kahanda, A Ben-Hur, KM Verspoor Journal of biomedical semantics 6, 1-14, 2015 | 33 | 2015 |
| A close look at protein function prediction evaluation protocols I Kahanda, CS Funk, F Ullah, KM Verspoor, A Ben-Hur GigaScience 4 (1), s13742-015-0082-5, 2015 | 20 | 2015 |
| Gene Ontology synonym generation rules lead to increased performance in biomedical concept recognition CS Funk, KB Cohen, LE Hunter, KM Verspoor Journal of biomedical semantics 7, 1-16, 2016 | 13 | 2016 |
| Conservative quantization of fast covariance intersection C Funk, B Noack, UD Hanebeck 2020 IEEE International Conference on Multisensor Fusion and Integration for …, 2020 | 12 | 2020 |
| Conservative quantization of covariance matrices with applications to decentralized information fusion C Funk, B Noack, UD Hanebeck Sensors 21 (9), 3059, 2021 | 8 | 2021 |
| Combining heterogenous data for prediction of disease related and pharmacogenes CS Funk, LE Hunter, KB Cohen Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 328, 2014 | 7 | 2014 |
| Fractional extended and unscented Kalman filtering for state of charge estimation of lithium-ion batteries M Kupper, C Funk, M Eckert, S Hohmann 2018 Annual American Control Conference (ACC), 3855-3862, 2018 | 6 | 2018 |
| Recognition and normalization of terminology from large biomedical ontologies and their application for pharmacogene and protein function prediction CS Funk University of Colorado Denver, Anschutz Medical Campus, 2015 | 3 | 2015 |
| State Estimation with Event-Based Inputs Using Stochastic Triggers B Noack, C Funk, S Radtke, UD Hanebeck IFAC-PapersOnLine 53 (2), 2324-2329, 2020 | 2 | 2020 |
| Evaluating a variety of text-mined features for automatic protein function prediction C Funk, I Kahanda, A Ben-Hur, K Verspoor Proceedings of the BioOntologies SIG at ISMB 14, 13-17, 2014 | 2 | 2014 |
| Kalman Filtered Compressive Sensing Using Pseudo-Measurements H Zhao, C Funk, B Noack, U Hanebeck, M Beigl 2021 IEEE International Conference on Multisensor Fusion and Integration for …, 2021 | 1 | 2021 |
| Semantic precision and recall for concept annotation of text M Bada, WA Baumgartner Jr, C Funk, LE Hunter, K Verspoor Proceedings of Bio-Ontologies, 30-37, 2014 | 1 | 2014 |
| An Event-Based Approach for the Conservative Compression of Covariance Matrices C Funk, B Noack arXiv preprint arXiv:2403.05977, 2024 | | 2024 |
