PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways A Bhattacharya, JD Ziebarth, Y Cui Nucleic acids research 42 (D1), D86-D91, 2014 | 386 | 2014 |
CTCFBSDB 2.0: a database for CTCF-binding sites and genome organization JD Ziebarth, A Bhattacharya, Y Cui Nucleic acids research 41 (D1), D188-D194, 2012 | 176 | 2012 |
Age-associated microRNA Expression in Human Peripheral Blood is Associated with All-cause Mortality and Age-related Traits T Huan, G Chen, C Liu, A Bhattacharya, J Rong, B Chen, S Seshadri, ... Aging Cell, 2017 | 159 | 2017 |
PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits JD Ziebarth, A Bhattacharya, A Chen, Y Cui Nucleic acids research 40 (D1), D216-D221, 2012 | 143 | 2012 |
SomamiR 2.0: a database of cancer somatic mutations altering microRNA–ceRNA interactions A Bhattacharya, Y Cui Nucleic acids research 44 (D1), D1005-D1010, 2016 | 126 | 2016 |
Integrative analysis of somatic mutations altering microRNA targeting in cancer genomes JD Ziebarth, A Bhattacharya, Y Cui Public Library of Science 7 (10), e47137, 2012 | 86 | 2012 |
Divisive Correlation Clustering Algorithm (DCCA) for grouping of genes: detecting varying patterns in expression profiles A Bhattacharya, RK De bioinformatics 24 (11), 1359-1366, 2008 | 85 | 2008 |
SomamiR: a database for somatic mutations impacting microRNA function in cancer A Bhattacharya, JD Ziebarth, Y Cui Nucleic acids research 41 (D1), D977-D982, 2013 | 82 | 2013 |
Dissecting the roles of microRNAs in coronary heart disease via integrative genomic analyses T Huan, J Rong, K Tanriverdi, Q Meng, A Bhattacharya, DD McManus, ... Arteriosclerosis, thrombosis, and vascular biology 35 (4), 1011-1021, 2015 | 71 | 2015 |
Mergeomics: a web server for identifying pathological pathways, networks, and key regulators via multidimensional data integration D Arneson, A Bhattacharya, L Shu, VP Mäkinen, X Yang BMC Genomics 17 (1), 10.1186/s12864-016-3057-8, 2016 | 67 | 2016 |
Bi-correlation clustering algorithm for determining a set of co-regulated genes A Bhattacharya, RK De Bioinformatics 25 (21), 2795-2801, 2009 | 61 | 2009 |
miRNA biogenesis enzyme Drosha is required for vascular smooth muscle cell survival P Fan, Z Chen, P Tian, W Liu, Y Jiao, Y Xue, A Bhattacharya, J Wu, M Lu, ... PloS one 8 (4), e60888, 2013 | 47 | 2013 |
miR2GO: Comparative functional analysis for microRNAs A Bhattacharya, Y Cui Bioinformatics, 2015 | 37 | 2015 |
Bayesian Network Webserver: a comprehensive tool for biological network modeling JD Ziebarth, A Bhattacharya, Y Cui Bioinformatics 29 (21), 2801-2803, 2013 | 37 | 2013 |
A GPU-accelerated algorithm for biclustering analysis and detection of condition-dependent coexpression network modules A Bhattacharya, Y Cui Scientific Reports 7 (1), 4162, 2017 | 33 | 2017 |
Average correlation clustering algorithm (ACCA) for grouping of co-regulated genes with similar pattern of variation in their expression values A Bhattacharya, RK De Journal of Biomedical Informatics 43 (4), 560-568, 2010 | 24 | 2010 |
Systematic analysis of microRNA targeting impacted by small insertions and deletions in human genome A Bhattacharya, JD Ziebarth, Y Cui Public Library of Science 7 (9), e46176, 2012 | 22 | 2012 |
Systematic prediction of the impacts of mutations in microRNA seed sequences A Bhattacharya, Y Cui Journal of Integrative Bioinformatics (JIB) 14 (1), 2017 | 16 | 2017 |
Analytical validation and performance characteristics of a 48-gene next-generation sequencing panel for detecting potentially actionable genomic alterations in myeloid neoplasms SH Rosenthal, A Gerasimova, C Ma, HR Li, A Grupe, H Chong, A Acab, ... Plos one 16 (4), e0243683, 2021 | 11 | 2021 |
OCDD: an obesity and co-morbid disease database I Ray, A Bhattacharya, RK De BioData Mining 10, 1-11, 2017 | 11 | 2017 |