Interactions in the microbiome: communities of organisms and communities of genes E Boon, CJ Meehan, C Whidden, DHJ Wong, MGI Langille, RG Beiko FEMS microbiology reviews 38 (1), 90-118, 2014 | 234 | 2014 |
Quantifying MCMC Exploration of Phylogenetic Tree Space C Whidden, FA Matsen IV Systematic Biology 64 (3), 472-491, 2015 | 99 | 2015 |
Fixed-parameter algorithms for maximum agreement forests C Whidden, RG Beiko, N Zeh SIAM Journal on Computing 42 (4), 1431-1466, 2013 | 92 | 2013 |
Supertrees based on the subtree prune-and-regraft distance C Whidden, N Zeh, RG Beiko Systematic Biology 63 (4), 566-581, 2014 | 87 | 2014 |
A unifying view on approximation and FPT of agreement forests C Whidden, N Zeh International Workshop on Algorithms in Bioinformatics, 390-402, 2009 | 62 | 2009 |
Automated detection, classification and counting of fish in fish passages with deep learning V Kandimalla, M Richard, F Smith, J Quirion, L Torgo, C Whidden Frontiers in Marine Science 8, 823173, 2022 | 57 | 2022 |
Fast FPT algorithms for computing rooted agreement forests: theory and experiments C Whidden, RG Beiko, N Zeh Experimental Algorithms: 9th International Symposium, SEA 2010, Ischia …, 2010 | 57 | 2010 |
19 dubious ways to compute the marginal likelihood of a phylogenetic tree topology M Fourment, AF Magee, C Whidden, A Bilge, FA Matsen IV, VN Minin Systematic biology 69 (2), 209-220, 2020 | 42 | 2020 |
Ricci–Ollivier curvature of the rooted phylogenetic subtree–prune–regraft graph C Whidden, FA Matsen IV Theoretical Computer Science 699, 1-20, 2017 | 29 | 2017 |
Calculating the unrooted subtree prune-and-regraft distance C Whidden, FA Matsen IEEE/ACM transactions on computational biology and bioinformatics 16 (3 …, 2018 | 26 | 2018 |
Fixed-parameter and approximation algorithms for maximum agreement forests C Whidden, RG Beiko, N Zeh arXiv preprint arXiv:1108.2664, 2011 | 26 | 2011 |
Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests of Multifurcating Trees C Whidden, RG Beiko, N Zeh Algorithmica, 2015 | 25 | 2015 |
The combinatorics of discrete time-trees: theory and open problems A Gavryushkin, C Whidden, FA Matsen IV Journal of mathematical biology 76 (5), 1101-1121, 2018 | 16 | 2018 |
Hybridization number on three rooted binary trees is EPT L Van Iersel, S Kelk, N Lekic, C Whidden, N Zeh SIAM Journal on Discrete Mathematics 30 (3), 1607-1631, 2016 | 15 | 2016 |
Systematic exploration of the high likelihood set of phylogenetic tree topologies C Whidden, BC Claywell, T Fisher, AF Magee, M Fourment, FA Matsen IV Systematic Biology 69 (2), 280-293, 2020 | 9 | 2020 |
Efficiently inferring pairwise subtree prune-and-regraft adjacencies between phylogenetic trees C Whidden, FA Matsen IV 2018 Proceedings of the Fifteenth Workshop on Analytic Algorithmics and …, 2018 | 8 | 2018 |
DalTREC 2005 QA System Jellyfish: Mark-and-Match Approach to Question Answering. T Abou-Assaleh, N Cercone, J Doyle, V Keselj, C Whidden TREC, 2005 | 5 | 2005 |
Echofilter: A Deep Learning Segmentation Model Improves the Automation, Standardization, and Timeliness for Post-Processing Echosounder Data in Tidal Energy Streams SC Lowe, LP McGarry, J Douglas, J Newport, S Oore, C Whidden, ... Front. Mar. Sci. 9, 2022 | 4 | 2022 |
A machine learning redundancy model for the Herring Cove smart buoy JW Fasuyi, J Newport, C Whidden Journal of Ocean Technology 15 (3), 2020 | 3 | 2020 |
Finding optimal parameters for edit distance based sequence classification is NP-hard V Kešelj, H Liu, N Zeh, C Blouin, C Whidden Proceedings of the KDD-09 Workshop on Statistical and Relational Learning in …, 2009 | 3 | 2009 |