| The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest D Szklarczyk, R Kirsch, M Koutrouli, K Nastou, F Mehryary, R Hachilif, ... Nucleic Acids Research 51 (D1), D638-D646, 2023 | 1428 | 2023 |
| A guide to conquer the biological network era using graph theory M Koutrouli, E Karatzas, D Paez-Espino, GA Pavlopoulos Frontiers in bioengineering and biotechnology 8, 34, 2020 | 219 | 2020 |
| The scverse project provides a computational ecosystem for single-cell omics data analysis I Virshup, D Bredikhin, L Heumos, G Palla, G Sturm, A Gayoso, I Kats, ... Nature biotechnology 41 (5), 604-606, 2023 | 67 | 2023 |
| The STRING database in 2023: Protein-protein association networks and functional enrichment analyses for any sequenced genome of interest., 2023, 51, pp D Szklarczyk, R Kirsch, M Koutrouli, K Nastou, F Mehryary, R Hachilif, ... D638-D646. DOI: https://doi. org/10.1093/nar/gkac1000, 0 | 27 | |
| Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review FA Baltoumas, S Zafeiropoulou, E Karatzas, M Koutrouli, F Thanati, ... Biomolecules 11 (8), 1245, 2021 | 16 | 2021 |
| NORMA: the network makeup artist—a web tool for network annotation visualization M Koutrouli, E Karatzas, K Papanikolopoulou, GA Pavlopoulos Genomics, Proteomics and Bioinformatics 20 (3), 578-586, 2022 | 10 | 2022 |
| Exploring Networks in the STRING and Reactome Database M Koutrouli, P Hatzis, GA Pavlopoulos Academic Press, 2021 | 9 | 2021 |
| A Guide to Conquer the Biological Network Era Using Graph Theory. Front Bioeng Biotechnol 2020; 8: 34 M Koutrouli, E Karatzas, D Paez-Espino, GA Pavlopoulos | 7 | 2020 |
| FAVA: High-quality functional association networks inferred from scRNA-seq and proteomics data M Koutrouli, K Nastou, P Piera Líndez, R Bouwmeester, S Rasmussen, ... Bioinformatics 40 (2), btae010, 2024 | 5 | 2024 |
| The network makeup artist (NORMA-2.0): Distinguishing annotated groups in a network using innovative layout strategies E Karatzas, M Koutrouli, FA Baltoumas, K Papanikolopoulou, ... Bioinformatics Advances 2 (1), vbac036, 2022 | 5 | 2022 |
| Systems Medicine M Koutrouli, P Hatzis, GA Pavlopoulos | 5 | 2021 |
| The Network Analysis Profiler (NAP v2. 0): A web tool for visual topological comparison between multiple networks M Koutrouli, T Theodosiou, I Iliopoulos, G Pavlopoulos EMBnet.journal 26, e943, 2021 | 3 | 2021 |
| U-CIE [/juː'siː/]: Color encoding of high-dimensional data M Koutrouli, JH Morris, LJ Jensen | 2 | 2021 |
| Corrigendum: A guide to conquer the biological network era using graph theory M Koutrouli, E Karatzas, D Paez-Espino, GA Pavlopoulos Frontiers in Bioengineering and Biotechnology 11, 2023 | 1 | 2023 |
| Lifestyle factors in the biomedical literature: comprehensive resources for named entity recognition E Nourani, M Koutrouli, Y Xie, D Vagiaki, S Pyysalo, K Nastou, S Brunak, ... bioRxiv, 2024.06. 13.598816, 2024 | | 2024 |
| Spatial Transcriptomics Sequencing of Mouse Liver at 2µm Resolution Using a Novel Spatial DNA Chip X Ding, K Hoff, R Swaminathan, S Pollom, T Huang, X Li, G Zhou, Z Bai, ... bioRxiv, 2024.01. 08.574734, 2024 | | 2024 |
| Spatial Transcriptomics Sequencing of Mouse Liver at 2 Micron Resolution Using a Novel Spatial DNA Chip X Ding, K Hoff, R Swaminathan, S Pollom, T Huang, X Li, G Zhou, Z Bai, ... | | 2024 |
| CoNECo: A Corpus for Named Entity recognition and normalization of protein Complexes K Nastou, M Koutrouli, S Pyysalo, LJ Jensen bioRxiv, 2024.05. 18.594800, 2024 | | 2024 |
| Improving dictionary-based named entity recognition with deep learning K Nastou, M Koutrouli, S Pyysalo, LJ Jensen bioRxiv, 2023.12. 10.570777, 2023 | | 2023 |
Lars Juhl JensenUniversity of Copenhagen在 cpr.ku.dk 的电子邮件经过验证
