Gene, pathway and network frameworks to identify epistatic interactions of single nucleotide polymorphisms derived from GWAS data Y Liu, S Maxwell, T Feng, X Zhu, RC Elston, M Koyutürk, MR Chance BMC systems biology 6, 1-12, 2012 | 53 | 2012 |
Key inflammatory pathway activations in the MCI stage of Alzheimer’s disease JA Pillai, S Maxwell, J Bena, LM Bekris, SM Rao, M Chance, BT Lamb, ... Annals of Clinical and Translational Neurology 6 (7), 1248-1262, 2019 | 39 | 2019 |
Systems biology analyses of gene expression and genome wide association study data in obstructive sleep apnea Y Liu, S Patel, R Nibbe, S Maxwell, SA Chowdhury, M Koyuturk, X Zhu, ... Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 14, 2011 | 39 | 2011 |
CoPhosK: A method for comprehensive kinase substrate annotation using co-phosphorylation analysis M Ayati, D Wiredja, D Schlatzer, S Maxwell, M Li, M Koyutürk, MR Chance PLoS computational biology 15 (2), e1006678, 2019 | 34 | 2019 |
Phosphoproteomics profiling of nonsmall cell lung cancer cells treated with a novel phosphatase activator DD Wiredja, M Ayati, S Mazhar, J Sangodkar, S Maxwell, D Schlatzer, ... Proteomics 17 (22), 1700214, 2017 | 33 | 2017 |
Efficiently enumerating all connected induced subgraphs of a large molecular network S Maxwell, MR Chance, M Koyutürk Algorithms for Computational Biology: First International Conference, AlCoB …, 2014 | 32 | 2014 |
Discovery of common sequences absent in the human reference genome using pooled samples from next generation sequencing Y Liu, M Koyutürk, S Maxwell, M Xiang, M Veigl, RS Cooper, BO Tayo, ... BMC genomics 15, 1-14, 2014 | 23 | 2014 |
Integrated microRNA and mRNA network analysis of the human myometrial transcriptome in the transition from quiescence to labor WE Ackerman IV, IA Buhimschi, D Brubaker, S Maxwell, KM Rood, ... Biology of Reproduction 98 (6), 834-845, 2018 | 19 | 2018 |
Proteome and protein network analyses of memory T cells find altered translation and cell stress signaling in treated human immunodeficiency virus patients exhibiting poor CD4 … S Azzam, D Schlatzer, S Maxwell, X Li, D Bazdar, Y Chen, R Asaad, ... Open Forum Infectious Diseases 3 (2), ofw037, 2016 | 16 | 2016 |
Integrative analysis of common neurodegenerative diseases using gene association, interaction networks and mRNA expression data Y Liu, M Koyutürk, S Maxwell, Z Zhao, MR Chance AMIA Summits on Translational Science Proceedings 2012, 62, 2012 | 15 | 2012 |
Proteomics and Network Analyses Reveal Inhibition of Akt‐mTOR Signaling in CD4+ T Cells by Mycobacterium tuberculosis Mannose‐Capped Lipoarabinomannan AF Karim, OJ Sande, SE Tomechko, X Ding, M Li, S Maxwell, RM Ewing, ... Proteomics 17 (22), 1700233, 2017 | 12 | 2017 |
Linearity of network proximity measures: implications for set-based queries and significance testing S Maxwell, MR Chance, M Koyutürk Bioinformatics 33 (9), 1354-1361, 2017 | 12 | 2017 |
dug: A Tool for Illuminating Disk Usage in HPC Environments S Maxwell, M Warfe, H Djohari Practice and Experience in Advanced Research Computing, 312-314, 2023 | | 2023 |
Random Walks with Variable Restarts for Negative-Example-Informed Label Propagation S Maxwell, M Koyuturk arXiv preprint arXiv:2110.07011, 2021 | | 2021 |
Soluble TREM2 CSF concentration in Alzheimer’s disease track VCAM1, known to regulate leukocyte migration into the brain (P3. 1-028) J Pillai, S Maxwell, L Bekris, J Leverenz Neurology 92 (15_supplement), P3. 1-028, 2019 | | 2019 |
Phosphoproteomics Profiling of Nonsmall Cell Lung Cancer Cells Treated with a Novel Phosphatase Activator (vol 17, 1700214, 2017) DD Wiredja, M Ayati, S Mazhar, J Sangodkar, S Maxwell, D Schlatzer, ... PROTEOMICS 18 (24), 2018 | | 2018 |
P4‐045: BIOLOGICAL PATHWAYS AND RELATED PROTEIN BIOMARKERS OF CLINICAL PROGRESSION IN EARLY ALZHEIMER'S DISEASE JA Pillai, S Maxwell, LM Bekris, BT Lamb, M Chance, JB Leverenz Alzheimer's & Dementia 14 (7S_Part_27), P1450-P1450, 2018 | | 2018 |
Efficient Enumeration of all Connected Induced Subgraphs of a Large Undirected Graph ST Maxwell Case Western Reserve University, 2014 | | 2014 |
Linearity of Network Proximity Measures: Implications for Set-based Queries and Significance Testing (Supplementary Material) S Maxwell, MR Chance, M Koyutürk | | |
Efficiently enumerating all connected induced subgraphs of a large molecular network: Supplementary Materials S Maxwell, MR Chance, M Koyutürk | | |