Evolutionary morphing DF Wiley, N Amenta, DA Alcantara, D Ghosh, YJ Kil, E Delson, ... VIS 05. IEEE Visualization, 2005., 431-438, 2005 | 498 | 2005 |
Analysis and visualization of tree space DM Hillis, TA Heath, K St. John Systematic Biology 54 (3), 471-482, 2005 | 262 | 2005 |
Reconstructing reticulate evolution in species-theory and practice L Nakhleh, T Warnow, CR Linder, K St. John Journal of Computational Biology 12 (6), 796-811, 2005 | 245 | 2005 |
Performance study of phylogenetic methods:(unweighted) quartet methods and neighbor-joining K St. John, T Warnow, BME Moret, L Vawter Journal of Algorithms 48 (1), 173-193, 2003 | 94 | 2003 |
Absolute convergence: true trees from short sequences T Warnow, BME Moret, K St. John Proceedings of the twelfth annual ACM-SIAM symposium on Discrete algorithms …, 2001 | 74 | 2001 |
Designing fast converging phylogenetic methods L Nakhleh, U Roshan, K St. John, J Sun, T Warnow Bioinformatics 17 (suppl 1), S190-S198, 2001 | 72 | 2001 |
Review Paper: The Shape of Phylogenetic Treespace K St. John Systematic Biology, 2016 | 66* | 2016 |
The accuracy of fast phylogenetic methods for large datasets L Nakhleh, BME Moret, U Roshan, K St. John, T Warnow Proc. 7th Pacific Symp. Biocomputing PSB 2002, 211-222, 2002 | 66 | 2002 |
A reduction algorithm for computing the hybridization number of two trees M Bordewich, S Linz, K St. John, C Semple Evolutionary bioinformatics online 3, 86, 2007 | 62 | 2007 |
A linear-time majority tree algorithm N Amenta, F Clarke, K St. John Algorithms in Bioinformatics (Proceedings of WABI 2003), 216-227, 2003 | 61 | 2003 |
Approximating subtree distances between Phylogenies ML Bonet Carbonell, K St. John, R Mahindru, N Amenta Journal of Computational Biology 13 (8), 1419-1434, 2006 | 59 | 2006 |
Untangling tanglegrams: Comparing trees by their drawings B Venkatachalam, J Apple, K St John, D Gusfield Computational Biology and Bioinformatics, IEEE/ACM Transactions on 7 (4 …, 2010 | 47 | 2010 |
Rotation distance is fixed-parameter tractable S Cleary, K St. John Information Processing Letters 109 (16), 918-922, 2009 | 42 | 2009 |
Efficiently calculating evolutionary tree measures using SAT M Bonet, K St. John Theory and Applications of Satisfiability Testing-SAT 2009, 4-17, 2009 | 36 | 2009 |
SequenceJuxtaposer: Fluid navigation for large-scale sequence comparison in context J Slack, K Hildebrand, T Munzner, K St. John German Conference on Bioinformatics 53, 2004 | 36 | 2004 |
A Linear-Time Approximation for Rotation Distance S Cleary, K St. John J. Graph Algorithms Appl 14 (2), 385-390, 2010 | 30* | 2010 |
Approximating geodesic tree distance N Amenta, M Godwin, N Postarnakevich, K St. John Information Processing Letters 103 (2), 61-65, 2007 | 29 | 2007 |
Counting Trees in a Phylogenetic Network Is #P-Complete S Linz, K St. John, C Semple SIAM Journal on Computing 42 (4), 1768-1776, 2013 | 25 | 2013 |
On Determining if Tree-based Networks Contain Fixed Trees M Anaya, O Anipchenko-Ulaj, A Ashfaq, J Chiu, M Kaiser, MS Ohsawa, ... Bulletin of mathematical biology, 1-9, 2016 | 21 | 2016 |
Incorporating hierarchical characters into phylogenetic analysis MJ Hopkins, K St. John Systematic Biology 70 (6), 1163-1180, 2021 | 20 | 2021 |