Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools AC Pineda-Peña, NR Faria, S Imbrechts, P Libin, AB Abecasis, ... Infection, genetics and evolution 19, 337-348, 2013 | 395 | 2013 |
An integrated map of HIV genome-wide variation from a population perspective G Li, S Piampongsant, NR Faria, A Voet, AC Pineda-Peña, R Khouri, ... Retrovirology 12, 1-18, 2015 | 157 | 2015 |
CRF19_cpx is an evolutionary fit HIV-1 variant strongly associated with rapid progression to AIDS in Cuba V Kouri, R Khouri, Y Alemán, Y Abrahantes, J Vercauteren, ... EBioMedicine 2 (3), 244-254, 2015 | 80 | 2015 |
The impact of HIV-1 within-host evolution on transmission dynamics K Theys, P Libin, AC Pineda-Pena, A Nowe, AM Vandamme, AB Abecasis Current opinion in virology 28, 92-101, 2018 | 55 | 2018 |
Trends and predictors of transmitted drug resistance (TDR) and clusters with TDR in a local Belgian HIV-1 epidemic AC Pineda-Peña, Y Schrooten, L Vinken, F Ferreira, G Li, NS Trovão, ... PLoS One 9 (7), e101738, 2014 | 46 | 2014 |
Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa NR Faria, N Vidal, J Lourenco, J Raghwani, KCE Sigaloff, AJ Tatem, ... PLoS pathogens 15 (12), e1007976, 2019 | 43 | 2019 |
Human papillomavirus detection in women with and without human immunodeficiency virus infection in Colombia M Camargo, SC Soto-De Leon, M Munoz, R Sanchez, D Peña-Herrera, ... BMC cancer 14, 1-10, 2014 | 34 | 2014 |
Implications of hepatitis C virus subtype 1a migration patterns for virus genetic sequencing policies in Italy L Cuypers, B Vrancken, L Fabeni, N Marascio, V Cento, VC Di Maio, ... BMC Evolutionary Biology 17, 1-10, 2017 | 27 | 2017 |
Association of HIV status with infection by multiple HPV types M Camargo, L Del Río‐Ospina, SC Soto‐De León, R Sánchez, ... Tropical Medicine & International Health 23 (11), 1259-1268, 2018 | 25 | 2018 |
Sub-epidemics explain localized high prevalence of reduced susceptibility to rilpivirine in treatment-naive HIV-1-infected patients: subtype and geographic compartmentalization … K Theys, K Van Laethem, P Gomes, G Baele, AC Pineda-Pena, ... AIDS research and human retroviruses 32 (5), 427-433, 2016 | 25 | 2016 |
Epidemic dispersion of HIV and HCV in a population of co-infected Romanian injecting drug users S Paraschiv, L Banica, I Nicolae, I Niculescu, A Abagiu, R Jipa, ... PloS one 12 (10), e0185866, 2017 | 24 | 2017 |
Tracing the impact of public health interventions on HIV-1 transmission in Portugal using molecular epidemiology TI Vasylyeva, L Du Plessis, AC Pineda-Peña, D Kühnert, P Lemey, ... The Journal of Infectious Diseases 220 (2), 233-243, 2019 | 23 | 2019 |
HIV-1 transmitted drug resistance in Latin America and the Caribbean: what do we know AC Pineda-Peña, DC Bello, O Sussmann, AM Vandamme, J Vercauteren, ... AIDS Rev 14 (4), 256-67, 2012 | 22 | 2012 |
Human papillomavirus detection from human immunodeficiency virus-infected Colombian women's paired urine and cervical samples M Munoz, M Camargo, SC Soto-De Leon, R Sanchez, D Parra, ... PLoS One 8 (2), e56509, 2013 | 21 | 2013 |
Molecular epidemiology of HIV-1 infected migrants followed up in Portugal: trends between 2001–2017 V Pimentel, M Pingarilho, D Alves, I Diogo, S Fernandes, M Miranda, ... Viruses 12 (3), 268, 2020 | 19 | 2020 |
Variación del estado de portador de Staphylococcus aureus en una población de estudiantes de medicina MA Gaona Cifuentes, DI Ríos Chaparro, MC Peña Serrato, ... Revista Ciencias de la Salud 7 (1), 37-46, 2009 | 19* | 2009 |
On the contribution of Angola to the initial spread of HIV-1 AC Pineda-Peña, J Varanda, JD Sousa, K Theys, I Bártolo, T Leitner, ... Infection, Genetics and Evolution 46, 219-222, 2016 | 17 | 2016 |
HIV-1 infection in Cyprus, the Eastern Mediterranean European frontier: a densely sampled transmission dynamics analysis from 1986 to 2012 AC Pineda-Peña, K Theys, DC Stylianou, I Demetriades, AB Abecasis, ... Scientific Reports 8 (1), 1702, 2018 | 16 | 2018 |
Drivers of HIV-1 transmission: the Portuguese case A Pineda-Peña, M Pingarilho, G Li, B Vrancken, P Libin, P Gomes, ... PLoS ONE 14 (9), e0218226, 2019 | 15 | 2019 |
The impact of immigration on tuberculosis and HIV burden between Colombia and Venezuela and across frontier regions NE Arenas-Suarez, LI Cuervo, EF Avila, A Duitama-Leal, ... Cadernos de Saúde Pública 37, e00078820, 2021 | 14 | 2021 |