| Comprehensive transcriptomic analysis of COVID-19 blood, lung, and airway AR Daamen, P Bachali, KA Owen, KM Kingsmore, EL Hubbard, ... Scientific reports 11 (1), 7052, 2021 | 145 | 2021 |
| Identification of alterations in macrophage activation associated with disease activity in systemic lupus erythematosus AC Labonte, B Kegerreis, NS Geraci, P Bachali, S Madamanchi, R Robl, ... PLoS One 13 (12), e0208132, 2018 | 94 | 2018 |
| Gene expression analysis delineates the potential roles of multiple interferons in systemic lupus erythematosus MD Catalina, P Bachali, NS Geraci, AC Grammer, PE Lipsky Communications biology 2 (1), 140, 2019 | 80 | 2019 |
| Machine learning approaches to predict lupus disease activity from gene expression data B Kegerreis, MD Catalina, P Bachali, NS Geraci, AC Labonte, C Zeng, ... Scientific reports 9 (1), 9617, 2019 | 70 | 2019 |
| Patient ancestry significantly contributes to molecular heterogeneity of systemic lupus erythematosus MD Catalina, P Bachali, AE Yeo, NS Geraci, MA Petri, AC Grammer, ... Jci Insight 5 (15), 2020 | 61 | 2020 |
| Identification and characterization of post-activated B cells in systemic autoimmune diseases SY Weißenberg, F Szelinski, E Schrezenmeier, AL Stefanski, ... Frontiers in immunology 10, 2136, 2019 | 60 | 2019 |
| Genomic identification of low-density granulocytes and analysis of their role in the pathogenesis of systemic lupus erythematosus BJ Kegerreis, MD Catalina, NS Geraci, P Bachali, PE Lipsky, ... The Journal of Immunology 202 (11), 3309-3317, 2019 | 44 | 2019 |
| Gut microbiota and bacterial DNA suppress autoimmunity by stimulating regulatory B cells in a murine model of lupus Q Mu, MR Edwards, BK Swartwout, X Cabana Puig, J Mao, J Zhu, ... Frontiers in immunology 11, 593353, 2020 | 38 | 2020 |
| Selective histone deacetylase 6 inhibition normalizes B cell activation and germinal center formation in a model of systemic lupus erythematosus J Ren, MD Catalina, K Eden, X Liao, KA Read, X Luo, RP McMillan, ... Frontiers in Immunology 10, 2512, 2019 | 35 | 2019 |
| Machine learning reveals distinct gene signature profiles in lesional and nonlesional regions of inflammatory skin diseases BA Martínez, S Shrotri, KM Kingsmore, P Bachali, AC Grammer, PE Lipsky Science advances 8 (17), eabn4776, 2022 | 33 | 2022 |
| Analysis of trans-ancestral SLE risk loci identifies unique biologic networks and drug targets in African and European ancestries KA Owen, A Price, H Ainsworth, BN Aidukaitis, P Bachali, MD Catalina, ... The American Journal of Human Genetics 107 (5), 864-881, 2020 | 32 | 2020 |
| Altered expression of genes controlling metabolism characterizes the tissue response to immune injury in lupus KM Kingsmore, P Bachali, MD Catalina, AR Daamen, SE Heuer, RD Robl, ... Scientific Reports 11 (1), 14789, 2021 | 31 | 2021 |
| Expression of human endogenous retroviruses in systemic lupus erythematosus: multiomic integration with gene expression N Stearrett, T Dawson, A Rahnavard, P Bachali, ML Bendall, C Zeng, ... Frontiers in immunology 12, 661437, 2021 | 25 | 2021 |
| Transcriptome and IgH Repertoire Analyses Show That CD11chi B Cells Are a Distinct Population With Similarity to B Cells Arising in Autoimmunity and Infection RW Maul, MD Catalina, V Kumar, P Bachali, AC Grammer, S Wang, ... Frontiers in immunology 12, 649458, 2021 | 25 | 2021 |
| Analysis of gene expression from systemic lupus erythematosus synovium reveals myeloid cell-driven pathogenesis of lupus arthritis EL Hubbard, MD Catalina, S Heuer, P Bachali, R Robl, NS Geraci, ... Scientific Reports 10 (1), 17361, 2020 | 17 | 2020 |
| Machine learning disease prediction and treatment prioritization PE Lipsky, MD Catalina, AC Grammer, B Kegerreis, A Labonte, ... US Patent App. 16/679,109, 2021 | 16 | 2021 |
| Abnormalities in intron retention characterize patients with systemic lupus erythematosus X Sun, Z Liu, Z Li, Z Zeng, W Peng, J Zhu, J Zhao, C Zhu, C Zeng, ... Scientific reports 13 (1), 5141, 2023 | 7 | 2023 |
| Classification of COVID-19 patients into clinically relevant subsets by a novel machine learning pipeline using transcriptomic features AR Daamen, P Bachali, AC Grammer, PE Lipsky International Journal of Molecular Sciences 24 (5), 4905, 2023 | 7 | 2023 |
| COVID-19 patients exhibit unique transcriptional signatures indicative of disease severity AR Daamen, P Bachali, CA Bonham, L Somerville, JM Sturek, ... Frontiers in Immunology 13, 989556, 2022 | 7 | 2022 |
| Nucleic acid-sensing and interferon-inducible pathways show differential methylation in MZ twins discordant for lupus and overexpression in independent lupus samples … MC Marion, PS Ramos, P Bachali, AC Labonte, KD Zimmerman, ... Genes 12 (12), 1898, 2021 | 7 | 2021 |
