In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features Y Ding, Y Tang, CK Kwok, Y Zhang, PC Bevilacqua, SM Assmann Nature 505 (7485), 696-700, 2014 | 821 | 2014 |
Incorporation of pseudouridine into mRNA enhances translation by diminishing PKR activation BR Anderson, H Muramatsu, SR Nallagatla, PC Bevilacqua, LH Sansing, ... Nucleic acids research 38 (17), 5884-5892, 2010 | 642 | 2010 |
General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme S Nakano, DM Chadalavada, PC Bevilacqua Science 287 (5457), 1493-1497, 2000 | 536 | 2000 |
RNA catalysis through compartmentalization CA Strulson, RC Molden, CD Keating, PC Bevilacqua Nature chemistry 4 (11), 941-946, 2012 | 357 | 2012 |
The double-stranded-RNA-binding motif: interference and much more B Tian, PC Bevilacqua, A Diegelman-Parente, MB Mathews Nature reviews Molecular cell biology 5 (12), 1013-1023, 2004 | 326 | 2004 |
Minor-groove recognition of double-stranded RNA by the double-stranded RNA-binding domain from the RNA-activated protein kinase PKR PC Bevilacqua, TR Cech Biochemistry 35 (31), 9983-9994, 1996 | 321 | 1996 |
5'-triphosphate-dependent activation of PKR by RNAs with short stem-loops SR Nallagatla, J Hwang, R Toroney, X Zheng, CE Cameron, ... science 318 (5855), 1455-1458, 2007 | 298 | 2007 |
Dynamics of ribozyme binding of substrate revealed by fluorescence-detected stopped-flow methods PC Bevilacqua, R Kierzek, KA Johnson, DH Turner Science 258 (5086), 1355-1358, 1992 | 252 | 1992 |
Mechanistic considerations for general acid− base catalysis by RNA: Revisiting the mechanism of the hairpin ribozyme PC Bevilacqua Biochemistry 42 (8), 2259-2265, 2003 | 251 | 2003 |
Bioreactor droplets from liposome-stabilized all-aqueous emulsions DC Dewey, CA Strulson, DN Cacace, PC Bevilacqua, CD Keating Nature communications 5 (1), 4670, 2014 | 235 | 2014 |
Genome-wide analysis of RNA secondary structure PC Bevilacqua, LE Ritchey, Z Su, SM Assmann Annual review of genetics 50 (1), 235-266, 2016 | 232 | 2016 |
Template-directed RNA polymerization and enhanced ribozyme catalysis inside membraneless compartments formed by coacervates RR Poudyal, RM Guth-Metzler, AJ Veenis, EA Frankel, CD Keating, ... Nature communications 10 (1), 490, 2019 | 225 | 2019 |
Catalytic roles for proton transfer and protonation in ribozymes PC Bevilacqua, TS Brown, S Nakano, R Yajima Biopolymers: Original Research on Biomolecules 73 (1), 90-109, 2004 | 189 | 2004 |
Mechanistic characterization of the HDV genomic ribozyme: assessing the catalytic and structural contributions of divalent metal ions within a multichannel reaction mechanism S Nakano, DJ Proctor, PC Bevilacqua Biochemistry 40 (40), 12022-12038, 2001 | 172 | 2001 |
Nucleoside modifications modulate activation of the protein kinase PKR in an RNA structure-specific manner SR Nallagatla, PC Bevilacqua Rna 14 (6), 1201-1213, 2008 | 171 | 2008 |
The RNA structurome: transcriptome-wide structure probing with next-generation sequencing CK Kwok, Y Tang, SM Assmann, PC Bevilacqua Trends in biochemical sciences 40 (4), 221-232, 2015 | 167 | 2015 |
Comparison of binding of mixed ribose-deoxyribose analogs of CUCU to a ribozyme and to GGAGAA by equilibrium dialysis: evidence for ribozyme specific interactions with 2 … PC Bevilacqua, DH Turner Biochemistry 30 (44), 10632-10640, 1991 | 161 | 1991 |
A 1.9 Å crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage JH Chen, R Yajima, DM Chadalavada, E Chase, PC Bevilacqua, ... Biochemistry 49 (31), 6508-6518, 2010 | 155 | 2010 |
Regulation of innate immunity through RNA structure and the protein kinase PKR SR Nallagatla, R Toroney, PC Bevilacqua Current opinion in structural biology 21 (1), 119-127, 2011 | 154 | 2011 |
Exploring the energy landscape of a small RNA hairpin H Ma, DJ Proctor, E Kierzek, R Kierzek, PC Bevilacqua, M Gruebele Journal of the American Chemical Society 128 (5), 1523-1530, 2006 | 154 | 2006 |