Implications of the hybrid epithelial/mesenchymal phenotype in metastasis MK Jolly, M Boareto, B Huang, D Jia, M Lu, E Ben-Jacob, JN Onuchic, ... Frontiers in oncology 5, 155, 2015 | 743 | 2015 |
Tumor budding: the name is EMT. Partial EMT. AD Grigore, MK Jolly, D Jia, MC Farach-Carson, H Levine Journal of clinical medicine 5 (5), 51, 2016 | 505 | 2016 |
Stability of the hybrid epithelial/mesenchymal phenotype MK Jolly, SC Tripathi, D Jia, SM Mooney, M Celiktas, SM Hanash, ... Oncotarget 7 (19), 27067, 2016 | 395 | 2016 |
HIF-1-mediated suppression of acyl-CoA dehydrogenases and fatty acid oxidation is critical for cancer progression D Huang, T Li, X Li, L Zhang, L Sun, X He, X Zhong, D Jia, L Song, ... Cell reports 8 (6), 1930-1942, 2014 | 307 | 2014 |
Elucidating cancer metabolic plasticity by coupling gene regulation with metabolic pathways D Jia, M Lu, KH Jung, JH Park, L Yu, JN Onuchic, BA Kaipparettu, ... Proceedings of the National Academy of Sciences of the United States of America, 2019 | 250 | 2019 |
Modeling the Genetic Regulation of Cancer Metabolism: Interplay Between Glycolysis and Oxidative Phosphorylation L Yu, M Lu, D Jia, J Ma, E Ben-Jacob, H Levine, BA Kaipparettu, ... Cancer Research, 2017 | 234 | 2017 |
Elucidating the metabolic plasticity of cancer: mitochondrial reprogramming and hybrid metabolic states D Jia, JH Park, KH Jung, H Levine, BA Kaipparettu Cells 7 (3), 21, 2018 | 206 | 2018 |
Coupling the modules of EMT and stemness: A tunable ‘stemness window’model MK Jolly, D Jia, M Boareto, SA Mani, KJ Pienta, E Ben-Jacob, H Levine Oncotarget 6 (28), 25161, 2015 | 168 | 2015 |
Interrogating the topological robustness of gene regulatory circuits by randomization B Huang, M Lu, D Jia, E Ben-Jacob, H Levine, JN Onuchic PLoS computational biology 13 (3), e1005456, 2017 | 152 | 2017 |
OVOL guides the epithelial-hybrid-mesenchymal transition D Jia, MK Jolly, M Boareto, P Parsana, SM Mooney, KJ Pienta, H Levine, ... Oncotarget 6 (17), 15436, 2015 | 127 | 2015 |
The GRHL2/ZEB feedback loop—a key axis in the regulation of EMT in breast cancer SM Mooney, V Talebian, MK Jolly, D Jia, M Gromala, H Levine, ... Journal of cellular biochemistry 118 (9), 2559-2570, 2017 | 97 | 2017 |
Phenotypic Plasticity and Cell Fate Decisions in Cancer: Insights from Dynamical Systems Theory D Jia, MK Jolly, P Kulkarni, H Levine Cancers 9 (7), 70, 2017 | 94 | 2017 |
Distinguishing mechanisms underlying EMT tristability D Jia, MK Jolly, SC Tripathi, PD Hollander, B Huang, M Lu, M Celiktas, ... Cancer Convergence 1 (2), 2017 | 82 | 2017 |
Phosphorylation-induced conformational dynamics in an intrinsically disordered protein and potential role in phenotypic heterogeneity P Kulkarni, MK Jolly, D Jia, SM Mooney, A Bhargava, LT Kagohara, ... Proceedings of the National Academy of Sciences 114 (13), E2644-E2653, 2017 | 81 | 2017 |
Interconnected feedback loops among ESRP1, HAS2, and CD44 regulate epithelial-mesenchymal plasticity in cancer MK Jolly, BT Preca, SC Tripathi, D Jia, JT George, SM Hanash, T Brabletz, ... APL bioengineering 2 (3), 2018 | 73 | 2018 |
Quantifying cancer epithelial-mesenchymal plasticity and its association with stemness and immune response D Jia, X Li, F Bocci, S Tripathi, Y Deng, MK Jolly, JN Onuchic, H Levine Journal of clinical medicine 8 (5), 725, 2019 | 70 | 2019 |
Towards decoding the coupled decision-making of metabolism and epithelial-to-mesenchymal transition in cancer D Jia, JH Park, H Kaur, KH Jung, S Yang, S Tripathi, M Galbraith, Y Deng, ... British Journal of Cancer, 2021 | 68 | 2021 |
Operating principles of tristable circuits regulating cellular differentiation D Jia, MK Jolly, W Harrison, M Boareto, E Ben-Jacob, H Levine Physical biology 14 (3), 035007, 2017 | 50 | 2017 |
RACIPE: a computational tool for modeling gene regulatory circuits using randomization B Huang, D Jia, J Feng, H Levine, JN Onuchic, M Lu BMC systems biology 12, 1-12, 2018 | 43 | 2018 |
Breast cancer dormancy: need for clinically relevant models to address current gaps in knowledge GG Bushnell, AP Deshmukh, P Den Hollander, M Luo, R Soundararajan, ... NPJ Breast Cancer 7 (66), 2021 | 42 | 2021 |