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| Charting a dynamic DNA methylation landscape of the human genome MJ Ziller, H Gu, F Müller, J Donaghey, LTY Tsai, O Kohlbacher, ... Nature 500 (7463), 477-481, 2013 | 1424 | 2013 |
| Reference Maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines C Bock, E Kiskinis, G Verstappen, H Gu, G Boulting, ZD Smith, M Ziller, ... Cell 144 (3), 439-452, 2011 | 1144 | 2011 |
| Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells J Liao, R Karnik, H Gu, MJ Ziller, K Clement, AM Tsankov, V Akopian, ... Nature genetics 47 (5), 469-478, 2015 | 535 | 2015 |
| Pathways disrupted in human ALS motor neurons identified through genetic correction of mutant SOD1 E Kiskinis, J Sandoe, LA Williams, GL Boulting, R Moccia, BJ Wainger, ... Cell stem cell 14 (6), 781-795, 2014 | 510 | 2014 |
| Genomic distribution and inter-sample variation of non-CpG methylation across human cell types MJ Ziller, F Müller, J Liao, Y Zhang, H Gu, C Bock, P Boyle, CB Epstein, ... PLoS genetics 7 (12), e1002389, 2011 | 495 | 2011 |
| Transcriptional and epigenetic dynamics during specification of human embryonic stem cells CA Gifford, MJ Ziller, H Gu, C Trapnell, J Donaghey, A Tsankov, ... Cell 153 (5), 1149-1163, 2013 | 488 | 2013 |
| Transcription factor binding dynamics during human ES cell differentiation AM Tsankov, H Gu, V Akopian, MJ Ziller, J Donaghey, I Amit, A Gnirke, ... Nature 518 (7539), 344-349, 2015 | 383 | 2015 |
| Locally disordered methylation forms the basis of intratumor methylome variation in chronic lymphocytic leukemia DA Landau, K Clement, MJ Ziller, P Boyle, J Fan, H Gu, K Stevenson, ... Cancer cell 26 (6), 813-825, 2014 | 380 | 2014 |
| Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing MJ Ziller, KD Hansen, A Meissner, MJ Aryee Nature methods 12 (3), 230-232, 2015 | 289 | 2015 |
| Epigenetic memory underlies cell-autonomous heterogeneous behavior of hematopoietic stem cells WC Vionnie, RZ Yusuf, T Oki, J Wu, B Saez, X Wang, C Cook, ... Cell 167 (5), 1310-1322. e17, 2016 | 285 | 2016 |
| Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling P Boyle, K Clement, H Gu, ZD Smith, M Ziller, JL Fostel, L Holmes, ... Genome biology 13, 1-10, 2012 | 276 | 2012 |
| Integrative analyses of human reprogramming reveal dynamic nature of induced pluripotency D Cacchiarelli, C Trapnell, MJ Ziller, M Soumillon, M Cesana, R Karnik, ... Cell 162 (2), 412-424, 2015 | 243 | 2015 |
| Dissecting neural differentiation regulatory networks through epigenetic footprinting MJ Ziller, R Edri, Y Yaffe, J Donaghey, R Pop, W Mallard, R Issner, ... Nature 518 (7539), 355-359, 2015 | 215 | 2015 |
| Genetic determinants and epigenetic effects of pioneer-factor occupancy J Donaghey, S Thakurela, J Charlton, JS Chen, ZD Smith, H Gu, R Pop, ... Nature genetics 50 (2), 250-258, 2018 | 167 | 2018 |
| Genetic and epigenetic variation, but not diet, shape the sperm methylome JM Shea, RW Serra, BR Carone, HP Shulha, A Kucukural, MJ Ziller, ... Developmental cell 35 (6), 750-758, 2015 | 154 | 2015 |
| Genome-wide tracking of dCas9-methyltransferase footprints C Galonska, J Charlton, AL Mattei, J Donaghey, K Clement, H Gu, ... Nature communications 9 (1), 597, 2018 | 145 | 2018 |
| Universality of protein reentrant condensation in solution induced by multivalent metal ions F Zhang, S Weggler, MJ Ziller, L Ianeselli, BS Heck, A Hildebrandt, ... Proteins: Structure, Function, and Bioinformatics 78 (16), 3450-3457, 2010 | 136 | 2010 |
| Ground state conditions induce rapid reorganization of core pluripotency factor binding before global epigenetic reprogramming C Galonska, MJ Ziller, R Karnik, A Meissner Cell stem cell 17 (4), 462-470, 2015 | 121 | 2015 |
| Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies A Dräger, M Kronfeld, MJ Ziller, J Supper, H Planatscher, JB Magnus, ... BMC Systems Biology 3, 1-24, 2009 | 102 | 2009 |
