| Earth mover’s distance (EMD): a true metric for comparing biomarker expression levels in cell populations DY Orlova, N Zimmerman, S Meehan, C Meehan, J Waters, EEB Ghosn, ... PloS one 11 (3), e0151859, 2016 | 102 | 2016 |
| Structure and epigenetics of nucleoli in comparison with non-nucleolar compartments E Bártová, AH Horáková, R Uhlířová, I Raška, G Galiová, D Orlova, ... Journal of Histochemistry & Cytochemistry 58 (5), 391-403, 2010 | 94 | 2010 |
| Acetylation‐dependent nuclear arrangement and recruitment of BMI1 protein to UV‐damaged chromatin G Šustáčková, S Kozubek, L Stixová, S Legartová, P Matula, D Orlova, ... Journal of cellular physiology 227 (5), 1838-1850, 2012 | 64 | 2012 |
| Light scattering by neutrophils: model, simulation, and experiment DY Orlova, MA Yurkin, AG Hoekstra, VP Maltsev Journal of Biomedical Optics 13 (5), 054057-054057-7, 2008 | 42 | 2008 |
| AutoGate: automating analysis of flow cytometry data S Meehan, G Walther, W Moore, D Orlova, C Meehan, D Parks, E Ghosn, ... Immunologic research 58, 218-223, 2014 | 28 | 2014 |
| QFMatch: multidimensional flow and mass cytometry samples alignment DY Orlova, S Meehan, D Parks, WA Moore, C Meehan, Q Zhao, ... Scientific reports 8 (1), 3291, 2018 | 20 | 2018 |
| Science not art: statistically sound methods for identifying subsets in multi-dimensional flow and mass cytometry data sets DY Orlova, LA Herzenberg, G Walther Nature Reviews Immunology 18 (1), 77-77, 2018 | 18 | 2018 |
| Dynamic quantification of antigen molecules with flow cytometry AE Moskalensky, AV Chernyshev, MA Yurkin, VM Nekrasov, ... Journal of immunological methods 418, 66-74, 2015 | 17 | 2015 |
| Transcriptional reprogramming of infiltrating neutrophils drives lung pathology in severe COVID-19 despite low viral load DJ Eddins, J Yang, A Kosters, VD Giacalone, X Pechuan-Jorge, ... Blood advances 7 (5), 778-799, 2023 | 15 | 2023 |
| Arrangement of nuclear structures is not transmitted through mitosis but is identical in sister cells DY Orlova, L Stixová, S Kozubek, HJ Gierman, G Šustáčková, ... Journal of cellular biochemistry 113 (11), 3313-3329, 2012 | 15 | 2012 |
| Distribution function approach to the study of the kinetics of IgM antibody binding to FcγRIIIb (CD16b) receptors on neutrophils by flow cytometry DY Orlova, VI Borisov, VS Kozhevnikov, VP Maltsev, AV Chernyshev Journal of theoretical biology 290, 1-6, 2011 | 13 | 2011 |
| Automated subset identification and characterization pipeline for multidimensional flow and mass cytometry data clustering and visualization S Meehan, GA Kolyagin, D Parks, J Youngyunpipatkul, LA Herzenberg, ... Communications Biology 2 (1), 229, 2019 | 10 | 2019 |
| Systems and methods for cluster matching across samples and guided visualization of multidimensional cytometry data DY Orlova, SW Meehan, WA Moore, G Walther, DR Parks, LA Herzenberg, ... US Patent 10,685,045, 2020 | 9 | 2020 |
| A nonfitting method using a spatial sine window transform for inhomogeneous effective-diffusion measurements by FRAP DY Orlova, E Bártová, VP Maltsev, S Kozubek, AV Chernyshev Biophysical journal 100 (2), 507-516, 2011 | 9 | 2011 |
| SPEX: A modular end-to-end analytics tool for spatially resolved omics of tissues X Pechuan-Jorge, X Li, T Risom, A Zubkov, E Tabatsky, A Prilipko, X Ye, ... bioRxiv, 2022.08. 22.504841, 2022 | 6 | 2022 |
| Cluster processing and ranking methods including methods applicable to clusters developed through density based merging SW Meehan, WA Moore, G Walther, D Orlova, CGW Meehan, DR Parks, ... US Patent 10,503,756, 2019 | 6 | 2019 |
| Pathogenic neutrophilia drives acute respiratory distress syndrome in severe COVID-19 patients DJ Eddins, J Yang, A Kosters, VD Giacalone, X Pechuan, JD Chandler, ... bioRxiv, 2021.06. 02.446468, 2021 | 3 | 2021 |
| Surveillance of in situ tumor arrays reveals early environmental control of cancer immunity G Ortiz-Muñoz, M Brown, CB Carbone, J Pechuan-Jorge, AT Ritter, ... bioRxiv, 2021.05. 27.445482, 2021 | 3 | 2021 |
| Nuclear apoptotic volume decrease in individual cells: Confocal microscopy imaging and kinetic modeling IV Khalo, AI Konokhova, DY Orlova, KV Trusov, MA Yurkin, E Bartova, ... Journal of Theoretical Biology 454, 60-69, 2018 | 3 | 2018 |
| Fully automated (unsupervised) identification, matching, display and quantitation of subsets (clusters) by exhaustive projection pursuit methods SW Meehan, DY Orlova, WA Moore, DR Parks, C Meehan, G Walther, ... US Patent App. 16/401,067, 2019 | 2 | 2019 |
