eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses J Huerta-Cepas, D Szklarczyk, D Heller, A Hernández-Plaza, SK Forslund, ... Nucleic acids research 47 (D1), D309-D314, 2019 | 3087 | 2019 |
eggNOG-mapper v2: functional annotation, orthology assignments, and domain prediction at the metagenomic scale CP Cantalapiedra, A Hernández-Plaza, I Letunic, P Bork, J Huerta-Cepas Molecular biology and evolution 38 (12), 5825-5829, 2021 | 1940 | 2021 |
Profiling cellular diversity in sponges informs animal cell type and nervous system evolution JM Musser, KJ Schippers, M Nickel, G Mizzon, AB Kohn, C Pape, ... Science 374 (6568), 717-723, 2021 | 177 | 2021 |
eggNOG 6.0: enabling comparative genomics across 12 535 organisms A Hernández-Plaza, D Szklarczyk, J Botas, CP Cantalapiedra, ... Nucleic Acids Research 51 (D1), D389-D394, 2023 | 106 | 2023 |
proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes DR Mende, I Letunic, OM Maistrenko, TSB Schmidt, A Milanese, L Paoli, ... Nucleic Acids Research 48 (D1), D621-D625, 2020 | 92 | 2020 |
The Quest for Orthologs benchmark service and consensus calls in 2020 AM Altenhoff, J Garrayo-Ventas, S Cosentino, D Emms, NM Glover, ... Nucleic acids research 48 (W1), W538-W545, 2020 | 44 | 2020 |
Functional and evolutionary significance of unknown genes from uncultivated taxa Á Rodríguez del Río, J Giner-Lamia, CP Cantalapiedra, J Botas, Z Deng, ... Nature 626 (7998), 377-384, 2024 | 32 | 2024 |
980 Mende DR, Letunic I, Rattei T, Jensen LJ, von Mering C, Bork P. 2019. eggNOG 5.0: a 981 hierarchical, functionally and phylogenetically annotated orthology resource based … J Huerta-Cepas, D Szklarczyk, D Heller, A Hernández-Plaza, SK Forslund, ... Nucleic Acids Research 47, D309-D314, 0 | 21 | |
PhyloCloud: an online platform for making sense of phylogenomic data Z Deng, J Botas, CP Cantalapiedra, A Hernández-Plaza, ... Nucleic acids research 50 (W1), W577-W582, 2022 | 5 | 2022 |
Functional and evolutionary significance of unknown genes from uncultivated taxa A Rodríguez, J Giner-Lamia, CP Cantalapiedra, J Botas, Z Deng, ... Centro de Biotecnología y Genómica de Plantas (CBGP), 2024 | | 2024 |
TreeProfiler: A command-line tool for computing and visualizing phylogenetic profiles against large trees Z Deng, A Hernández-Plaza, J Huerta-Cepas bioRxiv, 2023.09. 21.558621, 2023 | | 2023 |