| Jupyter Notebooks–a publishing format for reproducible computational workflows T Kluyver, B Ragan-Kelley, F Pérez, B Granger, M Bussonnier, J Frederic, ... Positioning and power in academic publishing: Players, agents and agendas, 87-90, 2016 | 3539* | 2016 |
| Jupyter notebooks T Kluyver, B Ragan-Kelley, F Pérez, BE Granger, M Bussonnier, ... a publishing format for reproducible computational workflows 2016, 87-90, 2016 | 2107 | 2016 |
| Binder 2.0-Reproducible, interactive, sharable environments for science at scale P Jupyter, M Bussonnier, J Forde, J Freeman, B Granger, T Head, ... SciPy, 2018 | 192* | 2018 |
| Active diffusion positions the nucleus in mouse oocytes M Almonacid, WW Ahmed, M Bussonnier, P Mailly, T Betz, R Voituriez, ... Nature cell biology 17 (4), 470-479, 2015 | 164 | 2015 |
| The Jupyter/IPython architecture: a unified view of computational research, from interactive exploration to communication and publication. M Ragan-Kelley, F Perez, B Granger, T Kluyver, P Ivanov, J Frederic, ... AGU, 2014 | 151 | 2014 |
| napari: a multi-dimensional image viewer for Python N Sofroniew, T Lambert, K Evans, J Nunez-Iglesias, G Bokota, P Winston, ... Zenodo, 2022 | 99 | 2022 |
| Jupyter development team T Kluyver, B Ragan-Kelley, F Pérez, B Granger, M Bussonnier, J Frederic, ... Jupyter Notebooks Publ format Reprod Comput Work ELPUB 2016, 87-90, 2016 | 81 | 2016 |
| Active mechanics reveal molecular-scale force kinetics in living oocytes WW Ahmed, É Fodor, M Almonacid, M Bussonnier, MH Verlhac, N Gov, ... Biophysical journal 114 (7), 1667-1679, 2018 | 79 | 2018 |
| Nonequilibrium dissipation in living oocytes É Fodor, WW Ahmed, M Almonacid, M Bussonnier, NS Gov, MH Verlhac, ... Europhysics Letters 116 (3), 30008, 2016 | 62 | 2016 |
| napari/napari: 0.4. 12rc2 N Sofroniew, T Lambert, K Evans, J Nunez-Iglesias, G Bokota, ... Zenodo https://doi. org/10.5281/zenodo 5586292, 2021 | 50 | 2021 |
| nbgrader: A tool for creating and grading assignments in the Jupyter Notebook DS Blank, D Bourgin, A Brown, M Bussonnier, J Frederic, B Granger, ... The Journal of Open Source Education 2 (11), 2019 | 43 | 2019 |
| Doncila Pop N Sofroniew, T Lambert, K Evans, J Nunez-Iglesias, G Bokota, P Winston, ... D., et al, 2022 | 34 | 2022 |
| napari: a multi-dimensional image viewer for Python J Ahlers, DA Moré, O Amsalem, A Anderson, G Bokota, P Boone, ... Zenodo, 1-2, 2023 | 27 | 2023 |
| Cell-sized liposome doublets reveal active tension build-up driven by acto-myosin dynamics V Caorsi, J Lemière, C Campillo, M Bussonnier, J Manzi, T Betz, ... Soft Matter 12 (29), 6223-6231, 2016 | 22 | 2016 |
| & Ivanov, P.(2016, May). Jupyter Notebooks T Kluyver, B Ragan-Kelley, F Pérez, BE Granger, M Bussonnier, ... a publishing format for reproducible computational workflows. In ELPUB, 0 | 22 | |
| Quantification of collagen contraction in three-dimensional cell culture KS Kopanska, M Bussonnier, S Geraldo, A Simon, D Vignjevic, T Betz Methods in cell biology 125, 353-372, 2015 | 21 | 2015 |
| Mechanical detection of a long-range actin network emanating from a biomimetic cortex M Bussonnier, K Carvalho, J Lemière, JF Joanny, C Sykes, T Betz Biophysical journal 107 (4), 854-862, 2014 | 15 | 2014 |
| Doncila Pop, D., et al.(2022). napari: a multi-dimensional image viewer for Python N Sofroniew, T Lambert, K Evans, J Nunez-Iglesias, G Bokota, P Winston, ... Zenodo https://doi. org/10.5281/ZENODO 6598542, 0 | 8 | |
| Reproducing machine learning research on binder J Forde, M Bussonnier, FA Fortin, B Granger, T Head, C Holdgraf, ... | 7 | 2018 |
| Interactive parallel computing in Python M Bussonnier | 5 | 2015 |
